Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq10 248 3e-62 >seq10 Length=47997241 Score = 248 bits (274), Expect = 3e-62 Identities = 537/800 (67%), Gaps = 25/800 (3%) Strand=Plus/Minus Query 1005 TGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATTCAGGAGGAC--CAGGCCT 1062 |||| ||||| ||| | |||||||| ||| | |||||| |||||| || || | || Sbjct 8295329 TGGCACGTGGAAAACGGCACCACGTCAGGAAAACCATGGATGCAGGAGAACAGCAAGTCT 8295270 Query 1063 CGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGATCAAGGCCGCGCTGGACA 1122 ||| || ||||| | | || ||| | || ||| |||| | | || ||||||| Sbjct 8295269 --TACCTCAGCTTCAGCTCGACCAAGAACGCCAGGAGCCAAATCAGGTCGGCCCTGGACA 8295212 Query 1123 ATGCCTCCAAGATCATGAGCCTGACAAAGACGGCTCCGGACTACCTGGTGGGCAGCAACC 1182 | | ||||| ||||| ||||||| | | || || ||||| ||||||||| Sbjct 8295211 ACTTCACCAAGGTCATGGGCCTGACCATAATGGTTCTGGACTGCCTGGTGGGGGTGCTGG 8295152 Query 1183 CGCCGGAGGACATTACCAAAAATCGGATCTACCAAATCCTGGAGCTGAACGGGTACGATC 1242 | | | |||| | |||| |||| | |||||||||| || ||| ||| | | ||| Sbjct 8295151 CTCTGCCAGACACTGCCAACGGCCGGACCCACCAAATCCTACAGATGAGCGGCTGCCATC 8295092 Query 1243 CGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAAGAAGTTCGGGAAGAGGAACA 1302 | | || | | ||| | || ||| | | | ||| | | |||| Sbjct 8295091 GGGCCTGTGCCGGCAGCGTGTGGGCGGCATGGTGTCCTTGCCAATACGGCAGACGAAACA 8295032 Query 1303 CCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACATCGCGGAAGCCATCGCCC 1362 ||| |||| | ||||| || | || ||| | | | || |||||||| || | |||| Sbjct 8295031 CCACCTGGTTGTTTGGACCTGTGACCACGCGAAGGAGCAGTATCGCGGAGGCTACTGCCC 8294972 Query 1363 ACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGATT 1422 || | |||| ||| || |||| || ||||| ||||||| ||||||||||| | | Sbjct 8294971 GTGCTGCTCCCTGCTATGGTTGCGCCAAATGGACAAATGAGATCTTTCCCTTCAGGGGCT 8294912 Query 1423 GCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGA 1482 ||||||| ||||| |||||||||||||||| |||| |||||||| ||| ||||| Sbjct 8294911 GCGTCGAGCAGATGACCATCTGGTGGGAGGAGGAAAAGAGGACGGCCACGGTGGTGGACG 8294852 Query 1483 GCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCATCGG 1542 || |||||||| || | || ||||||| || | ||||||| ||||| || || | Sbjct 8294851 CCGTCAAGGCCACTCCCAGGGGCGGCAAGGTCCGTGCAGACCAAATATGCAAATCCTCCG 8294792 Query 1543 CCCAGATCGAACCCACTCCCG----------TG--ATCGTCACCTCCAACACCAA----- 1585 | ||| | ||||| ||||||| || || |||| |||| || | Sbjct 8294791 CTCAGGTGGAACCGACTCCCGCCGTCGCCGTTGCCGTCATCACTGGCAACGCCGACATGG 8294732 Query 1586 -CATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCATCAGCAGCCGCTGCAGG 1644 |||| |||| ||| || ||||| || | || | | || ||||| | ||| |||| Sbjct 8294731 GCATGGGCGCGGTGGCCGATGGGAAGCCGACAAACTCCCAACACCAGCAACGGCTCCAGG 8294672 Query 1645 ACCGGATGTTTGAATTTGAACTTACCCGCCGTTTGGACCATGACTTTGG-GAAGG--TCA 1701 ||| || || ||||||| |||||| |||||| | || |||||| ||| | | Sbjct 8294671 ACCAGAGGTCCACGTTTGAACGTACCCGACGTTTGACGCCTGGCTTTGGCGAACGTTTGC 8294612 Query 1702 CCAAACAGGAAGTAAAGGACTTTTTCCGGTGGGCTTCCGATCACGTGACTGACGTGGCTC 1761 | |||| |||| || ||||||||| |||| |||||||| | ||||||||||| ||| Sbjct 8294611 CTAAACGAGAAGCCAAAAGCTTTTTCCGTTGGGTTTCCGATCCCATGACTGACGTGACTC 8294552 Query 1762 ATGAGTTCTACGTCAGAAAG 1781 |||||||| |||| | ||| Sbjct 8294551 TTGAGTTCTTCGTCGGGAAG 8294532 Score = 145 bits (160), Expect = 2e-31 Identities = 319/479 (67%), Gaps = 53/479 (11%) Strand=Plus/Minus Query 2796 AAGTTTGGGATCTAATACAATGGCTTCAGGCGGTGGCGCACCAATGGCAGACAATAACGA 2855 || |||||| |||| ||||||| || |||| || || | |||||||| || |||||| | Sbjct 8293566 AAATTTGGGCTCTACTACAATGTCTGCAGGAGGAGGTGTACCAATGGGTGATAATAACCA 8293507 Query 2856 GGGTGCCGATGGAGTGGGTAATTCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGG 2915 ||| || |||| | ||||| || |||| || | |||| ||||| |||| Sbjct 8293506 AGGTACC-ATGG----------TACTCAG---ATGGGCACTGAGGTTCCAAATGGATGGG 8293461 Query 2916 CGACAGAGTCATCACCACCAGCACCAGAACCTGGGCCCTGCCCACTTACAACAACCATCT 2975 ||| ||| ||||| | |||||||| |||| ||| |||||||| | || Sbjct 8293460 GAACAC---CATGTCCACCCG------AACCTGGGTCCTGTCCAGCTACAACAATTACCT 8293410 Query 2976 CTACAAGCAAATCTCCAGCCAATCAGGA--GCTTCAAACGACAACCACTACTTTGGCTAC 3033 |||| | ||||||||||| ||||| | || ||| | || | |||| | | | Sbjct 8293409 CTACCAACAAATCTCCAGT--ATCAGAACAGCCAGAAATGTCAGTGCCCACTTCAGGTGC 8293352 Query 3034 AGCACCCCTTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGAC 3093 |||||| | |||| || ||| ||||| ||||||||||||| | | || ||| Sbjct 8293351 AGCACCTCCTGGGAATA------CTTGAACAGGTTCCACTGCCACTGCAGCCTCCGAGAC 8293298 Query 3094 TGGCAGCGACTCATTAACAACAACTGGGGATTCCGGCCCAAGAAACTCAGCTTCAAGCTC 3153 ||||| ||||||| |||||| |||||||| || | ||||||| |||| ||| || Sbjct 8293297 TGGCAAAGACTCATCAACAACCACTGGGGAGTCTGTCCCAAGACTCTCAAAGTCAGAGTC 8293238 Query 3154 TTCAACATCCAAGTTAGAGGGGTCACGCAGAACGATGGCACGACGACTATTGCCAATAAC 3213 || || || ||||| | || |||| | || ||||||| ||| Sbjct 8293237 TTTAATATACAAGTCAAAGAAGTCATG----AC----------------TTGCCAACAAC 8293198 Query 3214 CTTACCAGCACGGTTCAAGTGTTTACGGACTCGGAGTATCAGCTCCCGTACGTGCTCGG 3272 || || || ||| || || ||| | || || ||||||||| |||| ||| | || || Sbjct 8293197 CTCACGCCCATGGTCCACGTCTTTGCTGATTCTGAGTATCAGGTCCCCTACCTTCTGGG 8293139 Score = 77.0 bits (84), Expect = 1e-10 Identities = 106/145 (73%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 2467 GACAACCCGTACCTCAAGTACAACCACGCCGACGCCGAGTTTCAGGAGCGTCTTCAAGAA 2526 || || ||||||||||||||||||||| ||| || |||| || ||| || ||| || Sbjct 8293876 GATAATCCGTACCTCAAGTACAACCACATGGACACCTAGTTCCAAGAG-GTACTCA--AA 8293820 Query 2527 GATACGTCTTTTGGGGGCAACCTTGGCAGAGCAGTCTTCCAGGCC-AAAAAGAGGATCCT 2585 || || |||| | | || | || ||| || || | ||||||| |||||| |||| | Sbjct 8293819 GACACCTCTTCTAGAGGTGATCTCAGCAAGGCTGTTTCCCAGGCCAAAAAAGTGGATAGT 8293760 Query 2586 TGAGCCTCTTGGTCTGGTTGAGGAA 2610 || | | ||||||||||||||| Sbjct 8293759 GGAATCCTTCGGTCTGGTTGAGGAA 8293735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15010667876415