Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq10 214 5e-52 >seq10 Length=47997241 Score = 214 bits (236), Expect = 5e-52 Identities = 547/826 (66%), Gaps = 25/826 (3%) Strand=Plus/Minus Query 1059 TGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATCCAGGAGGACCAGGCGTCC 1118 |||| ||||| ||| | |||||||| ||| | |||||| |||||| || ||| Sbjct 8295329 TGGCACGTGGAAAACGGCACCACGTCAGGAAAACCATGGATGCAGGAGAACAGCAAGTCT 8295270 Query 1119 TACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCACAAATCAAGGCCGCGCTGGACAAT 1178 ||| || ||||| | | || ||| | || ||||||| | | || |||||||| Sbjct 8295269 TACCTCAGCTTCAGCTCGACCAAGAACGCCAGGAGCCAAATCAGGTCGGCCCTGGACAAC 8295210 Query 1179 GCCTCCAAAATCATGAGCCTGACAAAGACGGCTCCGGACTACCTGGTGGGCCAGAACCCG 1238 | |||| ||||| ||||||| | | || || ||||| ||||||||| | | Sbjct 8295209 TTCACCAAGGTCATGGGCCTGACCATAATGGTTCTGGACTGCCTGGTGGGGGTGCTGGCT 8295150 Query 1239 CCGGAGGACATTTCCAGCAACCGCATCTACCGAATCCTCGAGATGAACGGGTACGATCCG 1298 | | |||| | ||| | ||| | | ||| |||||| |||||| ||| | | ||| | Sbjct 8295149 CTGCCAGACACTGCCAACGGCCGGACCCACCAAATCCTACAGATGAGCGGCTGCCATCGG 8295090 Query 1299 CAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAAGAAGTTCGGGAAGAGGAACACC 1358 | || | | ||| | || ||| | | | ||| | | |||||| Sbjct 8295089 GCCTGTGCCGGCAGCGTGTGGGCGGCATGGTGTCCTTGCCAATACGGCAGACGAAACACC 8295030 Query 1359 ATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACATCGCGGAAGCCATCGCCCAC 1418 | |||| | ||||| || | || ||| | | | || |||||||| || | |||| Sbjct 8295029 ACCTGGTTGTTTGGACCTGTGACCACGCGAAGGAGCAGTATCGCGGAGGCTACTGCCCGT 8294970 Query 1419 GCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGAACTTTCCGTTCAACGATTGC 1478 || | |||| ||| || |||| || ||||| ||||||| |||||| |||| | ||| Sbjct 8294969 GCTGCTCCCTGCTATGGTTGCGCCAAATGGACAAATGAGATCTTTCCCTTCAGGGGCTGC 8294910 Query 1479 GTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTAGAGAGC 1538 ||||| ||||| |||||||||||||||| |||| |||||||| ||| || || | Sbjct 8294909 GTCGAGCAGATGACCATCTGGTGGGAGGAGGAAAAGAGGACGGCCACGGTGGTGGACGCC 8294850 Query 1539 GCCAAGGCCA-TCCTGGGCGGAAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCATCGGC 1597 | |||||||| ||| || || ||||||| || | ||||||| ||||| || || || Sbjct 8294849 GTCAAGGCCACTCCCAGG-GGCGGCAAGGTCCGTGCAGACCAAATATGCAAATCCTCCGC 8294791 Query 1598 CCAGATCGACCCAACTCCCG----------TG--ATCGTCACCTCCAACACCAA------ 1639 ||| | || || ||||||| || || |||| |||| || | Sbjct 8294790 TCAGGTGGAACCGACTCCCGCCGTCGCCGTTGCCGTCATCACTGGCAACGCCGACATGGG 8294731 Query 1640 CATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAGCACCAACAACCACTCCAGGA 1699 |||| ||||||| ||| || || |||| | || | | ||||| |||| |||||||| Sbjct 8294730 CATGGGCGCGGTGGCCGATGGGAAGCCGACAAACTCCCAACACCAGCAACGGCTCCAGGA 8294671 Query 1700 CCGGATGTTCAAGTTCGAGCTCACCAAGCGCCTGGAGCACGACTTTGGC-AAGG--TCAC 1756 || || || || ||| || | ||| || || || | ||||||| || | | | Sbjct 8294670 CCAGAGGTCCACGTTTGAACGTACCCGACGTTTGACGCCTGGCTTTGGCGAACGTTTGCC 8294611 Query 1757 CAAGCAGGAAGTCAAAGACTTTTTCCGGTGGGCGTCAGATCACGTGACCGAGGTGACTCA 1816 || | |||| |||| ||||||||| |||| || |||| | |||| || ||||||| Sbjct 8294610 TAAACGAGAAGCCAAAAGCTTTTTCCGTTGGGTTTCCGATCCCATGACTGACGTGACTCT 8294551 Query 1817 CGAGTTTTACGTCAGAAAGGGTGGAGCTAGAAAG-AGGCCCGCCCC 1861 ||||| | |||| | || | ||| ||| | ||||||||||| Sbjct 8294550 TGAGTTCTTCGTCGGGAA-GACCGAGTCAGAGGGAAGGCCCGCCCC 8294506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15141863225580