Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq10 226 9e-56 >seq10 Length=47997241 Score = 226 bits (250), Expect = 9e-56 Identities = 355/507 (70%), Gaps = 21/507 (4%) Strand=Plus/Minus Query 1313 CGCAACACCATCTGGCTGTTTGGGCCGGCCACCACGGGCAAGACCAACATCGCGGAAGCC 1372 || ||||||| |||| ||||||| || | |||||| | | || || |||||||| || Sbjct 8295038 CGAAACACCACCTGGTTGTTTGGACCTGTGACCACGCGAAGGAGCAGTATCGCGGAGGCT 8294979 Query 1373 ATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTC 1432 | |||| || | |||| ||| || |||| ||| ||||| ||||||| |||||||||| Sbjct 8294978 ACTGCCCGTGCTGCTCCCTGCTATGGTTGCGCCAAATGGACAAATGAGATCTTTCCCTTC 8294919 Query 1433 AATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTC 1492 | | |||||||| ||||| |||||||||||||||| |||| |||||||| ||| Sbjct 8294918 AGGGGCTGCGTCGAGCAGATGACCATCTGGTGGGAGGAGGAAAAGAGGACGGCCACGGTG 8294859 Query 1493 GTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAG 1552 ||||| ||| |||||||| || | | ||| ||||||| || | ||||||| ||||| Sbjct 8294858 GTGGACGCCGTCAAGGCCACTCCCAGGGGCGGCAAGGTCCGTGCAGACCAAATATGCAAA 8294799 Query 1553 TCGTCCGCCCAGATCGACCCCACCCCCG----------TG--ATCGTCACCTCCAACACC 1600 || ||||| ||| | || || || |||| || || |||| |||| || Sbjct 8294798 TCCTCCGCTCAGGTGGAACCGACTCCCGCCGTCGCCGTTGCCGTCATCACTGGCAACGCC 8294739 Query 1601 AA------CATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCG 1654 | |||| |||| ||| || ||||| || | || | | |||||||| | | Sbjct 8294738 GACATGGGCATGGGCGCGGTGGCCGATGGGAAGCCGACAAACTCCCAACACCAGCAACGG 8294679 Query 1655 TTGCAGGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCATGACTTTGGC-AA 1713 | ||||||| || || || ||||||| ||||| ||| || || || ||||||| || Sbjct 8294678 CTCCAGGACCAGAGGTCCACGTTTGAACGTACCCGACGTTTGACGCCTGGCTTTGGCGAA 8294619 Query 1714 GG--TGACAAAGCAGGAAGTCAAAGAGTTCTTCCGCTGGGCGCAGGATCACGTGACCGAG 1771 | || | || | |||| |||| || ||||| |||| |||| | |||| || Sbjct 8294618 CGTTTGCCTAAACGAGAAGCCAAAAGCTTTTTCCGTTGGGTTTCCGATCCCATGACTGAC 8294559 Query 1772 GTGGCGCATGAGTTCTACGTCAGAAAG 1798 ||| | | |||||||| |||| | ||| Sbjct 8294558 GTGACTCTTGAGTTCTTCGTCGGGAAG 8294532 Score = 120 bits (132), Expect = 9e-24 Identities = 166/232 (72%), Gaps = 9/232 (4%) Strand=Plus/Minus Query 2968 TGCCCACCTACAATAACCACCTCTACAAGCAAATCTCCAGTGCTTCAACGGGGGCCAGCA 3027 || ||| |||||| || |||||||| | |||||||||||| ||| | |||| | Sbjct 8293431 TGTCCAGCTACAACAATTACCTCTACCAACAAATCTCCAGTATCAGAACAG---CCAGAA 8293375 Query 3028 ACGACAACCACTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGATTTCAACAGATTCC 3087 | | || | ||||| | | ||||||| |||||| || || ||||| |||| Sbjct 8293374 ATGTCAGTGCCCACTTCAGGTGCAGCACCTCCTGGGAATACTTG------AACAGGTTCC 8293321 Query 3088 ACTGCCACTTTTCACCACGTGACTGGCAGCGACTCATCAACAACAATTGGGGATTCCGGC 3147 ||||||||| | || |||||||| |||||||||||||| | |||||| || | | Sbjct 8293320 ACTGCCACTGCAGCCTCCGAGACTGGCAAAGACTCATCAACAACCACTGGGGAGTCTGTC 8293261 Query 3148 CCAAGAGACTCAACTTCAAACTCTTCAACATCCAAGTCAAGGAGGTCACGAC 3199 |||||| ||||| ||| | |||| || || |||||||| || |||| ||| Sbjct 8293260 CCAAGACTCTCAAAGTCAGAGTCTTTAATATACAAGTCAAAGAAGTCATGAC 8293209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14985068783895