Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq10 149 2e-32 >seq10 Length=47997241 Score = 149 bits (164), Expect = 2e-32 Identities = 196/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 1216 GGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACCGGCAAGACCAACATCGCG 1275 |||| |||||||| ||| |||| |||| || |||||| | | || || |||||| Sbjct 8295044 GGCAGACGAAACACCACCTGGTTGTTTGGACCTGTGACCACGCGAAGGAGCAGTATCGCG 8294985 Query 1276 GAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTT 1335 ||||||| ||||| ||||| || | |||||| |||| || ||||| || |||| |||| Sbjct 8294984 GAGGCTACTGCCCGTGCTGCTCCCTGCTATGGTTGCGCCAAATGGACAAATGAGATCTTT 8294925 Query 1336 CCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGGAGGGCAAAATGACCGCC 1395 || |||| | ||||||||| | |||| |||||||||||||||| || | ||| ||| Sbjct 8294924 CCCTTCAGGGGCTGCGTCGAGCAGATGACCATCTGGTGGGAGGAGGAAAAGAGGACGGCC 8294865 Query 1396 AAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGGGTGAGAGTGGACCAAAAA 1455 | |||||||| | | |||||| | || | || ||| | | ||||||| | Sbjct 8294864 ACGGTGGTGGACGCCGTCAAGGCCACTCCCAGGGGCGGCAAGGTCCGTGCAGACCAAATA 8294805 Query 1456 TGCAAAGCTTCGGTTCCGATCGAACCGACGCC 1487 |||||| | || | || | | |||||||| || Sbjct 8294804 TGCAAATCCTCCGCTCAGGTGGAACCGACTCC 8294773 Score = 109 bits (120), Expect = 2e-20 Identities = 171/244 (70%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 2995 CCACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACAAACGAATC-CAAGGA 3053 ||||||||||||||||| || ||||||||||||| |||| ||| ||| |||| | || | Sbjct 8293449 CCACCCGAACCTGGGTCCTGTCCAGCTACAACAATTACCTCTACCAACAAATCTCCAGTA 8293390 Query 3054 CCCAGCGGAGGCNNNNNNNNNNNNNNATTCTTTGGATTCAGCACCCCCTGGGGATACTTT 3113 | || || | ||| | | ||||||| |||||| |||||| Sbjct 8293389 TC-AGAACAGCCAGAAATGTCAGTGCCCACTTCAGGTGCAGCACCTCCTGGGAATACTT- 8293332 Query 3114 GACTACAATCGATTCCACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCATCAACAAC 3173 || ||| | ||||||||||||| || |||||||||||| |||||||||||||| Sbjct 8293331 GA--ACA---GGTTCCACTGCCACTGCAGCCTCCGAGACTGGCAAAGACTCATCAACAAC 8293277 Query 3174 AACTGGGGCATCCGTCCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAGAG 3233 ||||||| || ||||||| | | | ||| ||||||| || || || ||||| Sbjct 8293276 CACTGGGGAGTCTGTCCCAAGACTCTCAAAGTCAGAGTCTTTAATATACAAGTCAAAGAA 8293217 Query 3234 GTCA 3237 |||| Sbjct 8293216 GTCA 8293213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14908271506335