Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq10 93.3 1e-15 >seq10 Length=47997241 Score = 93.3 bits (102), Expect = 1e-15 Identities = 174/258 (67%), Gaps = 21/258 (8%) Strand=Plus/Minus Query 2923 CACCACCTCAACCCGCACCTGGGTCCTGCCGACCTACAACAACCACCTGTACCTGCGGCT 2982 ||||| || ||||| |||||||||||| | | ||||||||| |||| |||| | | Sbjct 8293457 CACCATGTCCACCCGAACCTGGGTCCTGTCCAGCTACAACAATTACCTCTACCAACAAAT 8293398 Query 2983 CGGCT------------CGAGCAACGCCAGCGACACCTTCAACGGATTCTCCACCCCCTG 3030 | | | || || | ||| | | ||||| | | | |||| |||| Sbjct 8293397 CTCCAGTATCAGAACAGCCAGAAATGTCAGTGCCCACTTCA---GGTGCAGCACCTCCTG 8293341 Query 3031 GGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGACTGGCAAAGGCT 3090 || |||||| ||| | ||||||||||||| | | ||||||||||||| || Sbjct 8293340 GGAATACTTG------AACAGGTTCCACTGCCACTGCAGCCTCCGAGACTGGCAAAGACT 8293287 Query 3091 CATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCAAGTCCGCATCTTCAACATCCA 3150 ||||||||||||||||||| | | ||||| | | ||||| | |||| || || || Sbjct 8293286 CATCAACAACCACTGGGGAGTCTGTCCCAAGACTCTCAAAGTCAGAGTCTTTAATATACA 8293227 Query 3151 AGTTAAGGAGGTCACGAC 3168 ||| || || |||| ||| Sbjct 8293226 AGTCAAAGAAGTCATGAC 8293209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14905071619770