Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq10 111 5e-21 >seq10 Length=47997241 Score = 111 bits (122), Expect = 5e-21 Identities = 210/303 (69%), Gaps = 31/303 (10%) Strand=Plus/Minus Query 3117 ATTGGCATTGCGATTCCCAATGGCTGGGAGACACAGTCATTACCAAGACTACAAGAACCT 3176 || |||| || | |||| ||||| |||| |||| || | | || |||||| Sbjct 8293488 ATGGGCACTGAGGTTCCAAATGGATGGGGAACAC---------CATGTCCACCCGAACCT 8293438 Query 3177 GGGTCCTGCCAAGCTACAACAACCACATGTACCAAGCCATCACAAG---CGGAACAAACC 3233 |||||||| | ||||||||||| || | |||||| ||| | || | ||||| | Sbjct 8293437 GGGTCCTGTCCAGCTACAACAATTACCTCTACCAACAAATCTCCAGTATCAGAACAG--C 8293380 Query 3234 CAGAC---TCAAATACCCAATATGCTGGATACAGCACCCCCTGGGGGTACTTTGATTTCA 3290 |||| ||| | |||| | | || | ||||||| |||||| ||||| | Sbjct 8293379 CAGAAATGTCAG-TGCCCACTT--CAGG-TGCAGCACCTCCTGGGAATACTTG------A 8293330 Query 3291 ACAGATTCCACTGCCATTTCT--CTCCAAGAGACTGGCAGAGACTCATCAACAACCATTG 3348 |||| ||||||||||| | | |||| |||||||||| ||||||||||||||||| || Sbjct 8293329 ACAGGTTCCACTGCCACTGCAGCCTCC--GAGACTGGCAAAGACTCATCAACAACCACTG 8293272 Query 3349 GGGGATTAGACCGAAAGCACTCAAATTCAAGATATTCAATGTGCAAGTTAAAGAAGTCAC 3408 ||| | | || || | |||||| ||| | || ||| | ||||| |||||||||| Sbjct 8293271 GGGAGTCTGTCCCAAGACTCTCAAAGTCAGAGTCTTTAATATACAAGTCAAAGAAGTCAT 8293212 Query 3409 GAC 3411 ||| Sbjct 8293211 GAC 8293209 Score = 98.7 bits (108), Expect = 3e-17 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 1553 GGACCTGCGACCACCGGAAAGACCAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTC 1612 ||||||| |||||| ||| || || || || ||||||| ||||| ||||| |||| | Sbjct 8295017 GGACCTGTGACCACGCGAAGGAGCAGTATCGCGGAGGCTACTGCCCGTGCTGCTCCCTGC 8294958 Query 1613 TATGGCTGTGTTAACTGGACTAATGAGAACTTCCCATTTAATGACTGCGTTGATAAAATG 1672 ||||| || | || ||||| ||||||| ||| || || | | |||||| || | ||| Sbjct 8294957 TATGGTTGCGCCAAATGGACAAATGAGATCTTTCCCTTCAGGGGCTGCGTCGAGCAGATG 8294898 Query 1673 CTTATATGGTGGGAGGAGGGAAAAATGAC 1701 || ||||||||||||| ||| | ||| Sbjct 8294897 ACCATCTGGTGGGAGGAGGAAAAGAGGAC 8294869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16309821821805