Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq10 269 8e-69 >seq10 Length=47997241 Score = 269 bits (298), Expect = 8e-69 Identities = 512/756 (68%), Gaps = 76/756 (10%) Strand=Plus/Minus Query 2760 CCTCAAGTTTGGGAGCTGATACAATGTCTGCGGGAGGTGGCGGCCCATTGGGCGACAATA 2819 ||| || |||||| || |||||||||||| ||||| || | ||| |||| || |||| Sbjct 8293570 CCTTAAATTTGGGCTCTACTACAATGTCTGCAGGAGGAGGTGTACCAATGGGTGATAATA 8293511 Query 2820 ACCAAGGTGCCGATGGAGTGGGCAATGCCTCGGGAGATTGGCATTGCGATTCCACGTGGA 2879 |||||||| || |||| ||| |||| |||| || | ||||| |||| Sbjct 8293510 ACCAAGGTACC-ATGGTA----------CTC---AGATGGGCACTGAGGTTCCAAATGGA 8293465 Query 2880 TGGGGGACAGAGTCGTCACCAAGTCCACCCGAACCTGGGTGCTGCCCAGCTACAACAACC 2939 ||||| ||| ||| |||||||||||||||||| ||| ||||||||||||| Sbjct 8293464 TGGGGAACA---------CCATGTCCACCCGAACCTGGGTCCTGTCCAGCTACAACAATT 8293414 Query 2940 ACCAGTACCGAGAGATCAAAAGCGGCTCCGTCGACGGAAGCAACGCCAACGCCTACTTTG 2999 ||| |||| | | ||| || || | | | || || | || ||| |||| Sbjct 8293413 ACCTCTACCAACAAATCTCCAGTA--TCAGAACA-GCCAGAAATGTCAGTGCCCACTTCA 8293357 Query 3000 GATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCACTGGAGCCCCC 3059 | | ||||||| |||||| ||||| ||| | |||||| ||||||| |||| || Sbjct 8293356 GGTGCAGCACCTCCTGGGAATACTTG------AACAGGTTCCACTGCCACTGCAGCCTCC 8293303 Query 3060 GAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTCCCTCAGAGTCA 3119 |||||||||||||||||||||||||| ||||||| || | ||| | | |||| ||||| Sbjct 8293302 GAGACTGGCAAAGACTCATCAACAACCACTGGGGAGTCTGTCCCAAGACTCTCAAAGTCA 8293243 Query 3120 AAATCTTCAACATTCAAGTCAAAGAGGTCACGGTGCAGGACTCCACCACNNNNATCGCCA 3179 | |||| || || ||||||||||| || || ||| | |||| Sbjct 8293242 GAGTCTTTAATATACAAGTCAAAGAAGT-------CATGAC-------------TTGCCA 8293203 Query 3180 ACAACCTCACCTCCACCGTCCAAGTGTTTACGGACGACGACTACCAGCTGCCCTACGTCG 3239 |||||||||| ||| ||||| || ||| | || || || ||| | |||||| | Sbjct 8293202 ACAACCTCACGCCCATGGTCCACGTCTTTGCTGATTCTGAGTATCAGGTCCCCTACCTTC 8293143 Query 3240 TCGGCAACGGGACCGAGGGATGCCTGCCGGCCTTCCCTCCGCAGGTCTTTACGCTGCCGC 3299 | |||| | || | ||| |||||||||| || ||||| ||| |||||| || || Sbjct 8293142 TGGGCAGTGCAACAGGGGGCTGCCTGCCGGTGTT-CCTCCAGAGGCCTTTACACTCTTGC 8293084 Query 3300 AGTACGGTTACGCGACGCTGAACCGCGACAACACAGAAAATCCCACCGAGAGGAGCAGCT 3359 ||| |||| | |||||||| || | ||| | || || |||| | Sbjct 8293083 AGT----------GACGAT-------GACAACACCGACAGTCCTATAGATAGAAGCACCC 8293041 Query 3360 TCTTCTGCCTAGAGTACTTTCCCAGCAAGATGCTGAGAACGGGCAACAACTTTGAGTTTA 3419 | | || ||| | ||||||||| |||||||||||| | ||||||||| ||| ||| Sbjct 8293040 TTTACTCCCTGGTGTACTTTCCTGGCAAGATGCTGAAGCCCAGCAACAACTCTGAATTTG 8292981 Query 3420 CCTACAACTTTGAGGAGGTGCCCTTCCACTCCAGCTTCGCTCCCAGTCAGAACCTGTT-- 3477 ||| | | ||||| || ||| || || | || || || | |||||| || || || Sbjct 8292980 CCTTCCAATTTGAAGAAGTGGCCCTCTATTCAAGATTTGTACCCAGTGAG---CTTTTCA 8292924 Query 3478 -CAAGCTGGCCAACCCGCTGGTGGACCAGTACTTGT 3512 ||| ||||| || | || ||| || || ||||||| Sbjct 8292923 ACAAACTGGCTAATCTGCAGGTTGATCAATACTTGT 8292888 Score = 150 bits (166), Expect = 5e-33 Identities = 381/571 (67%), Gaps = 10/571 (2%) Strand=Plus/Minus Query 1010 CAGAAATACATGGCGCTCGTCAACTGGCTCGTGGAGCACGGCATCACTTCCGAGAAGCAG 1069 |||||||| ||||| | || ||||||| |||||| |||||| ||| || | || | Sbjct 8295353 CAGAAATATATGGCTGTGGTGAACTGGCACGTGGAAAACGGCACCACGTCAGGAAAACCA 8295294 Query 1070 TGGATCCAGGAAAATCAGGAGAGCT-ACCTCTCCTTCAACTCCACCGGCAACTCTCGGAG 1128 ||||| ||||| || ||| | || ||||| ||||| ||| ||| ||| | |||| Sbjct 8295293 TGGATGCAGGAGAA-CAGCAAGTCTTACCTCAGCTTCAGCTCGACCAAGAACGCCAGGAG 8295235 Query 1129 CCAGATCAAGGCCGCGCTCGACAACGCGACCAAAATTATGAGTCTGACAAAAAGCGCGGT 1188 ||| |||| | | || || |||||| ||||| | ||| | ||||| | || | | Sbjct 8295234 CCAAATCAGGTCGGCCCTGGACAACTTCACCAAGGTCATGGGCCTGACCATAATGGTTCT 8295175 Query 1189 GGACTACCTCGTGGGGA-GCTCCGTTCCCGAGGACATTTCAAAAAACAGAATCTGGCAAA 1247 ||||| ||| |||||| ||| | | || ||| | | || | | | | |||| Sbjct 8295174 GGACTGCCTGGTGGGGGTGCTGGCTCTGCCAG-ACACTGCCAACGGCCGGACCCACCAAA 8295116 Query 1248 TTTTTGAGATGAATGGCTACGACCCGGCCTACGCGGGATCCATCCTCTA--CGGC-TGGT 1304 | | |||||| |||| | | | ||||| || || || | | | |||| |||| Sbjct 8295115 TCCTACAGATGAGCGGCTGCCATCGGGCCTGTGCCGG---CAGCGTGTGGGCGGCATGGT 8295059 Query 1305 GTCAGCGCTCCTTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCA 1364 ||| || | | || | |||||| |||| | | ||||| | || || | | Sbjct 8295058 GTCCTTGCCAATACGGCAGACGAAACACCACCTGGTTGTTTGGACCTGTGACCACGCGAA 8294999 Query 1365 AGACCAACATCGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGA 1424 || || ||||||||||| | |||| ||| |||| || || |||| || |||| Sbjct 8294998 GGAGCAGTATCGCGGAGGCTACTGCCCGTGCTGCTCCCTGCTATGGTTGCGCCAAATGGA 8294939 Query 1425 CCAATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGG 1484 | ||||| | ||||||||| | | ||| || || | ||| ||| ||||||||||||| Sbjct 8294938 CAAATGAGATCTTTCCCTTCAGGGGCTGCGTCGAGCAGATGACCATCTGGTGGGAGGAGG 8294879 Query 1485 GAAAGATGACCAACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGC 1544 ||||| ||| || |||||| || ||| |||||||| | ||||| ||||| | Sbjct 8294878 AAAAGAGGACGGCCACGGTGGTGGACGCCGTCAAGGCCACTCCCAGGGGCGGCAAGGTCC 8294819 Query 1545 GGGTCGATCAGAAATGTAAATCCTCTGTTCA 1575 | | || || | ||| |||||||| | ||| Sbjct 8294818 GTGCAGACCAAATATGCAAATCCTCCGCTCA 8294788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14741877404955