Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq10 219 1e-53 >seq10 Length=47997241 Score = 219 bits (242), Expect = 1e-53 Identities = 546/815 (67%), Gaps = 33/815 (4%) Strand=Plus/Minus Query 1036 GGCATCACCTCCGAGAAGCAGTGGATCCAGGAGGAC--CAGGCCTCGTACATCTCCTTCA 1093 |||| ||| || | || | ||||| |||||| || || | || ||| || ||||| Sbjct 8295314 GGCACCACGTCAGGAAAACCATGGATGCAGGAGAACAGCAAGTCT--TACCTCAGCTTCA 8295257 Query 1094 ACGCCGCCTCCAACTCGCGGTCCCAGATCAAGGCCGCGCTGGACAATGCCGGCAAGATCA 1153 | | || ||| | || ||| |||| | | || |||||||| | |||| ||| Sbjct 8295256 GCTCGACCAAGAACGCCAGGAGCCAAATCAGGTCGGCCCTGGACAACTTCACCAAGGTCA 8295197 Query 1154 TGGCGCTGACCAAATCCGCGCCCGACTACCTGGTGGGGCC-CTCGCTGCCCGCGGACATT 1212 ||| ||||||| | | | |||| |||||||||| || ||| | | |||| | Sbjct 8295196 TGGGCCTGACCATAATGGTTCTGGACTGCCTGGTGGGGGTGCTGGCTCTGC-CAGACACT 8295138 Query 1213 AAAACCAACCGCATCTACCGCATCCTGGAGCTGAACGGGTACGATCCTGCCTACGCCGGC 1272 | | ||| | | ||| ||||| || ||| ||| | | ||| |||| |||||| Sbjct 8295137 GCCAACGGCCGGACCCACCAAATCCTACAGATGAGCGGCTGCCATCGGGCCTGTGCCGGC 8295078 Query 1273 TCCGTCTTTCTCGGC-TGG-GCCCAGAAAAAGTTCGGGAAGCGCAACACCATCTGGCTGT 1330 ||| | |||| ||| | || || | ||| | || ||||||| |||| ||| Sbjct 8295077 AGCGTGTGGG-CGGCATGGTGTCCTTGCCAA-TACGGCAGACGAAACACCACCTGGTTGT 8295020 Query 1331 TTGGGCCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCT 1390 |||| || | ||||| | | || || || ||||| || | |||| || | |||| Sbjct 8295019 TTGGACCTGTGACCACGCGAAGGAGCAGTATCGCGGAGGCTACTGCCCGTGCTGCTCCCT 8294960 Query 1391 TCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGA 1450 ||| || |||| ||| ||||| ||||||| ||||||||||| | |||||||| ||| Sbjct 8294959 GCTATGGTTGCGCCAAATGGACAAATGAGATCTTTCCCTTCAGGGGCTGCGTCGAGCAGA 8294900 Query 1451 TGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCA 1510 || |||||||||||||||| |||| |||||||| ||| ||||| ||| |||||||| Sbjct 8294899 TGACCATCTGGTGGGAGGAGGAAAAGAGGACGGCCACGGTGGTGGACGCCGTCAAGGCCA 8294840 Query 1511 TTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACC 1570 || | | ||| ||||||| || | ||||||| ||||| || ||||| ||| | || | Sbjct 8294839 CTCCCAGGGGCGGCAAGGTCCGTGCAGACCAAATATGCAAATCCTCCGCTCAGGTGGAAC 8294780 Query 1571 CCACCCCCG----------TG--ATCGTCACCTCCAACACCAA------CATGTGCGCCG 1612 | || |||| || || |||| |||| || | |||| |||| | Sbjct 8294779 CGACTCCCGCCGTCGCCGTTGCCGTCATCACTGGCAACGCCGACATGGGCATGGGCGCGG 8294720 Query 1613 TGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGGACCGGATGTTCA 1672 || || ||||| || | || | | |||||||| | | | ||||||| || || || Sbjct 8294719 TGGCCGATGGGAAGCCGACAAACTCCCAACACCAGCAACGGCTCCAGGACCAGAGGTCCA 8294660 Query 1673 AATTTGAACTCACCCGCCGTCTGGAGCACGACTTTGGC-AAGG--TGACGAAGCAGGAAG 1729 ||||||| ||||| ||| || || | ||||||| || | || | || | |||| Sbjct 8294659 CGTTTGAACGTACCCGACGTTTGACGCCTGGCTTTGGCGAACGTTTGCCTAAACGAGAAG 8294600 Query 1730 TCAAAGAGTTCTTCCGCTGGGCCAGTGATCACGTGACCGAGGTGGCGCATGAGTTCTACG 1789 |||| || ||||| |||| |||| | |||| || ||| | | |||||||| || Sbjct 8294599 CCAAAAGCTTTTTCCGTTGGGTTTCCGATCCCATGACTGACGTGACTCTTGAGTTCTTCG 8294540 Query 1790 TCAGAAAGGGCGGAGCCAG-CAAAAGACCCGCCCC 1823 || | || | | ||| ||| ||| |||||||| Sbjct 8294539 TCGGGAA-GACCGAGTCAGAGGGAAGGCCCGCCCC 8294506 Score = 156 bits (172), Expect = 1e-34 Identities = 266/385 (69%), Gaps = 32/385 (8%) Strand=Plus/Minus Query 2817 TGGGATCTGGTACAGTGGCTGCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGTG 2876 |||| ||| |||| || ||||||| || || | |||||||| || |||||| ||||| Sbjct 8293561 TGGGCTCTACTACAATGTCTGCAGGAGGAGGTGTACCAATGGGTGATAATAACCAAGGTA 8293502 Query 2877 CCGACGGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACA 2936 || |||| ||||| || |||| || | ||||| |||| |||| ||| Sbjct 8293501 CCAT-------GGTA----CTCAG---ATGGGCACTGAGGTTCCAAATGGATGGGGAACA 8293456 Query 2937 GAGTCATTACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACA 2996 ||| ||||| |||||||||| |||| ||| ||||||||| |||||||| Sbjct 8293455 C---CATGTCCACC------CGAACCTGGGTCCTGTCCAGCTACAACAATTACCTCTACC 8293405 Query 2997 AGCAAATCTCCAGTGAAACTGCAGGTAGTACCAACGACAACACCTACTTCGGCTACAGCA 3056 | |||||||||||| | ||| || | | | || || ||||| | | ||||| Sbjct 8293404 AACAAATCTCCAGTATCAGAACAGCCAGAA---ATGTCAGTGCCCACTTCAGGTGCAGCA 8293348 Query 3057 CCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGC 3116 || |||||| || ||| ||||| ||||||||||||| | | || ||||||| Sbjct 8293347 CCTCCTGGGAATA------CTTGAACAGGTTCCACTGCCACTGCAGCCTCCGAGACTGGC 8293294 Query 3117 AGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAAGCTGCGGTTCAAGCTCTTCA 3176 | |||||||||||||| |||||||| || | ||||||| || ||| |||| | Sbjct 8293293 AAAGACTCATCAACAACCACTGGGGAGTCTGTCCCAAGACTCTCAAAGTCAGAGTCTTTA 8293234 Query 3177 ACATCCAGGTCAAGGAGGTCACGAC 3201 | || || ||||| || |||| ||| Sbjct 8293233 ATATACAAGTCAAAGAAGTCATGAC 8293209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14994668443590