Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq10 217 4e-53 >seq10 Length=47997241 Score = 217 bits (240), Expect = 4e-53 Identities = 375/541 (69%), Gaps = 23/541 (4%) Strand=Plus/Minus Query 1204 CGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGC 1263 ||| | ||| ||||||| |||| |||||||||| | ||||| | | || || || || Sbjct 8295045 CGGCAGACGAAACACCACCTGGTTGTTTGGACCTGTGACCACGCGAAGGAGCAGTATCGC 8294986 Query 1264 GGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTT 1323 ||| || | |||| || | |||| ||| || |||| ||| ||||| ||||||| ||| Sbjct 8294985 GGAGGCTACTGCCCGTGCTGCTCCCTGCTATGGTTGCGCCAAATGGACAAATGAGATCTT 8294926 Query 1324 TCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGC 1383 |||||||| | |||||||| ||||| |||||||||||||||| |||| |||||| Sbjct 8294925 TCCCTTCAGGGGCTGCGTCGAGCAGATGACCATCTGGTGGGAGGAGGAAAAGAGGACGGC 8294866 Query 1384 CAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAA 1443 || ||| ||||| ||| |||||||| || | | ||| ||||||| || | ||||||| Sbjct 8294865 CACGGTGGTGGACGCCGTCAAGGCCACTCCCAGGGGCGGCAAGGTCCGTGCAGACCAAAT 8294806 Query 1444 GTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCG----------TG--ATCGTCACCTC 1491 ||||| || ||||| ||| | || || || |||| || || |||| Sbjct 8294805 ATGCAAATCCTCCGCTCAGGTGGAACCGACTCCCGCCGTCGCCGTTGCCGTCATCACTGG 8294746 Query 1492 CAACACCAA------CATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCA 1545 |||| || | |||| |||| ||| || ||||| || | || | | ||||| Sbjct 8294745 CAACGCCGACATGGGCATGGGCGCGGTGGCCGATGGGAAGCCGACAAACTCCCAACACCA 8294686 Query 1546 GCAGCCTCTCCAGGACCGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTT 1605 ||| | |||||||||| || || | ||| |||| ||||| ||| || || | ||| Sbjct 8294685 GCAACGGCTCCAGGACCAGAGGTCCACGTTTGAACGTACCCGACGTTTGACGCCTGGCTT 8294626 Query 1606 TGGC-AAGG--TGACAAAGCAGGAAGTCAAAGAGTTCTTCCGCTGGGCCAGTGATCACGT 1662 |||| || | || | || | |||| |||| || ||||| |||| |||| | | Sbjct 8294625 TGGCGAACGTTTGCCTAAACGAGAAGCCAAAAGCTTTTTCCGTTGGGTTTCCGATCCCAT 8294566 Query 1663 GACCGAGGTGGCGCATGAGTTTTACGTCAGAAAGGGCGGAGCCAG-CAAAAGACCCGCCC 1721 ||| || ||| | | |||||| | |||| | || | | ||| ||| ||| ||||||| Sbjct 8294565 GACTGACGTGACTCTTGAGTTCTTCGTCGGGAA-GACCGAGTCAGAGGGAAGGCCCGCCC 8294507 Query 1722 C 1722 | Sbjct 8294506 C 8294506 Score = 156 bits (172), Expect = 1e-34 Identities = 342/512 (67%), Gaps = 59/512 (12%) Strand=Plus/Minus Query 2716 TGGGACCTAATACAATGGCTGCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGCG 2775 |||| ||| ||||||| ||||||| || || | |||||||| || |||||| |||| Sbjct 8293561 TGGGCTCTACTACAATGTCTGCAGGAGGAGGTGTACCAATGGGTGATAATAACCAAGGTA 8293502 Query 2776 CCGACGGAGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACA 2835 || |||| ||| | || |||| || | ||||| |||| |||| ||| Sbjct 8293501 CCAT-------GGTA----CTCAG---ATGGGCACTGAGGTTCCAAATGGATGGGGAACA 8293456 Query 2836 GAGTCATCACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACA 2895 ||| ||||| |||||||||| |||| ||| ||||||||| |||||||| Sbjct 8293455 C---CATGTCCACC------CGAACCTGGGTCCTGTCCAGCTACAACAATTACCTCTACC 8293405 Query 2896 AGCAAATCTCCAACGGGACATCGGGAGGAGCCACCAACGACAACACCTACTTCGGCTACA 2955 | |||||||||| ||| | | ||||| || | || || ||||| | | || Sbjct 8293404 AACAAATCTCCAGT-----ATCAGAAC-AGCCAGAAATGTCAGTGCCCACTTCAGGTGCA 8293351 Query 2956 GCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTTTTCACCACGTGACT 3015 ||||| |||||| || ||| ||||| ||||||||||||| | || |||| Sbjct 8293350 GCACCTCCTGGGAATA------CTTGAACAGGTTCCACTGCCACTGCAGCCTCCGAGACT 8293297 Query 3016 GGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAGACTCAGCTTCAAGCTCT 3075 |||| |||||||||||||| |||||||| || | ||||||| |||| ||| ||| Sbjct 8293296 GGCAAAGACTCATCAACAACCACTGGGGAGTCTGTCCCAAGACTCTCAAAGTCAGAGTCT 8293237 Query 3076 TCAACATCCAGGTCAAGGAGGTCACGCAGAATGAAGGCACCAAGACCATCGCCAATAACC 3135 | || || || ||||| || ||| |||| | ||||| |||| Sbjct 8293236 TTAATATACAAGTCAAAGAAGTC-------ATGA-------------CTTGCCAACAACC 8293197 Query 3136 TCACCAGCACCATCCAGGTGTTTACGGACTCGGAGTACCAGCTGCCGTACGTTCTCGGCT 3195 |||| || |||| || ||| | || || ||||| ||| | || ||| |||| ||| Sbjct 8293196 TCACGCCCATGGTCCACGTCTTTGCTGATTCTGAGTATCAGGTCCCCTACCTTCTGGGCA 8293137 Query 3196 CTGCCCACCA--GGGCTGCCTGCCTCCGTTCC 3225 || || || |||||||||||| ||||| Sbjct 8293136 GTG--CAACAGGGGGCTGCCTGCCGGTGTTCC 8293107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13945105650270