Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq10 149 2e-32 >seq10 Length=47997241 Score = 149 bits (164), Expect = 2e-32 Identities = 196/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 1216 GGCAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACCACCGGCAAGACCAACATCGCG 1275 |||| |||||||| ||| |||| ||||||| |||||| | | || || |||||| Sbjct 8295044 GGCAGACGAAACACCACCTGGTTGTTTGGACCTGTGACCACGCGAAGGAGCAGTATCGCG 8294985 Query 1276 GAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTT 1335 ||||||| ||||| ||||| || | |||||| |||| || ||||| || |||| |||| Sbjct 8294984 GAGGCTACTGCCCGTGCTGCTCCCTGCTATGGTTGCGCCAAATGGACAAATGAGATCTTT 8294925 Query 1336 CCGTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGGGAAGAGGGCAAAATGACCGCC 1395 || |||| | ||||||||| |||||| ||||||||||| |||| || | ||| ||| Sbjct 8294924 CCCTTCAGGGGCTGCGTCGAGCAGATGACCATCTGGTGGGAGGAGGAAAAGAGGACGGCC 8294865 Query 1396 AAGGTGGTGGAAACGGCTAAAGCGATTCTGGGAGGATCTCGGGTGAGAGTGGACCAAAAA 1455 | ||||||||| | | || || | || | || ||| | | ||||||| | Sbjct 8294864 ACGGTGGTGGACGCCGTCAAGGCCACTCCCAGGGGCGGCAAGGTCCGTGCAGACCAAATA 8294805 Query 1456 TGCAAAGCTTCGGTTCCGATCGAACCGACGCC 1487 |||||| | || | || | | |||||||| || Sbjct 8294804 TGCAAATCCTCCGCTCAGGTGGAACCGACTCC 8294773 Score = 109 bits (120), Expect = 2e-20 Identities = 247/373 (66%), Gaps = 34/373 (9%) Strand=Plus/Minus Query 2983 CCACTCGAACCTGGGTCCTGCCCAGCTACAACAACCACTTGTACAAGCGGATC-CAAGGA 3041 |||| ||||||||||||||| ||||||||||||| || | ||| | | ||| | || | Sbjct 8293449 CCACCCGAACCTGGGTCCTGTCCAGCTACAACAATTACCTCTACCAACAAATCTCCAGTA 8293390 Query 3042 CCGGGAGGAACCGACCCCAA---CAATAAATTCTTTGGATTCAGCACCCCCTGGGGGTAC 3098 | | ||| | | || || | ||| | | ||||||| |||||| ||| Sbjct 8293389 TCAG----AACAGCCAGAAATGTCAGTGCCCACTTCAGGTGCAGCACCTCCTGGGAATAC 8293334 Query 3099 TTTGACTACAACCGATTCCACTGCCACTTCTCCCCCCGAGACTGGCAACGACTCATCAAC 3158 || ||| | ||||||||||||| | || ||||||||||||| ||||||||||| Sbjct 8293333 TTG------AACAGGTTCCACTGCCACTGCAGCCTCCGAGACTGGCAAAGACTCATCAAC 8293280 Query 3159 AACAACTGGGGCATCCGACCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAA 3218 ||| ||||||| || | ||||| | | | ||| ||||||| || || || ||| Sbjct 8293279 AACCACTGGGGAGTCTGTCCCAAGACTCTCAAAGTCAGAGTCTTTAATATACAAGTCAAA 8293220 Query 3219 GAAGTCACTGTCCAAGACTCCAACACCACCATCGCCAACAACCTCACCAGCACGGTCCAA 3278 ||||||| || | | |||||||||||||| || |||||| Sbjct 8293219 GAAGTCA-TGAC-------------------TTGCCAACAACCTCACGCCCATGGTCCAC 8293180 Query 3279 GTCTTTGCGGACAAGGACTACCAGCTGCCGTACGTCCTCGGATCGGCTACAGAGGGCACC 3338 |||||||| || || || ||| | || ||| | || || || |||| |||| | Sbjct 8293179 GTCTTTGCTGATTCTGAGTATCAGGTCCCCTACCTTCTGGGCAGTGCAACAGGGGGCTGC 8293120 Query 3339 TTCCCGCCGTTCC 3351 | ||| ||||| Sbjct 8293119 CTGCCGGTGTTCC 8293107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14869872867555