Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq10 122 2e-24 >seq10 Length=47997241 Score = 122 bits (134), Expect = 2e-24 Identities = 216/310 (70%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 1088 ATGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGCTCGGC-TGGTGCCGCACCGG 1146 |||| ||||| | | | |||| || ||||||||| || |||| ||||| | | Sbjct 8295107 ATGAGCGGCTGCCATCGGGCCTGTGCCGGCAGCGTG-TGGGCGGCATGGTGTCCTTGCCA 8295049 Query 1147 CTTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAACCT 1206 | ||||| || |||||| |||| | || || || | || || | | || | | Sbjct 8295048 ATACGGCAGACGAAACACCACCTGGTTGTTTGGACCTGTGACCACGCGAAGGAGCAGTAT 8294989 Query 1207 CGCCGAGGCCATCAGCCACT-CGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGA 1265 ||| ||||| | | ||| | | | |||| ||| || |||| ||| ||||| || |||| Sbjct 8294988 CGCGGAGGCTA-CTGCCCGTGCTGCTCCCTGCTATGGTTGCGCCAAATGGACAAATGAGA 8294930 Query 1266 ACTTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGA 1325 ||| ||||||| | |||||| || |||||| ||||||||||||||||| |||| || Sbjct 8294929 TCTTTCCCTTCAGGGGCTGCGTCGAGCAGATGACCATCTGGTGGGAGGAGGAAAAGAGGA 8294870 Query 1326 CGTCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCGGCAGCAAGGTGCGCGTCGACC 1385 || ||| ||| || || || |||||||| | | | ||| ||||||| || | |||| Sbjct 8294869 CGGCCACGGTGGTGGACGCCGTCAAGGCCACTCCCAGGGGCGGCAAGGTCCGTGCAGACC 8294810 Query 1386 AGAAGTGCAA 1395 | | ||||| Sbjct 8294809 AAATATGCAA 8294800 Score = 114 bits (126), Expect = 4e-22 Identities = 251/377 (67%), Gaps = 32/377 (8%) Strand=Plus/Minus Query 2748 CACCAAGTCCACCCGAACCTGGAGCCTGCCCGCCTACAACAACCACCTCTACCGCCAGAT 2807 ||||| |||||||||||||||| |||| || ||||||||| ||||||||| || || Sbjct 8293457 CACCATGTCCACCCGAACCTGGGTCCTGTCCAGCTACAACAATTACCTCTACCAACAAAT 8293398 Query 2808 C--CAGTC-CAGCGGCACCGGAGACGGCA---CGTACTTTGGTTACAGCACGCCTTGGGG 2861 | |||| ||| || || | | || | |||| | | |||||| | |||| Sbjct 8293397 CTCCAGTATCAGAACAGCCAGAAATGTCAGTGCCCACTTCAGGTGCAGCACCTCCTGGGA 8293338 Query 2862 ATACTTCGATTTCAATCGATTCCACTGCCACTTTTCTCCCAGGGACTGGCAGCGGCTCAT 2921 |||||| | || | ||||||||||||| | | | |||||||| | ||||| Sbjct 8293337 ATACTTGAA---CA---GGTTCCACTGCCACTGCAGCCTCCGAGACTGGCAAAGACTCAT 8293284 Query 2922 CAACAACCACTGGGGCATCCGCCCCAAGCGGCTCCACTTTAAGCTCTTCAACATCCAGGT 2981 ||||||||||||||| || | |||||| ||| | | | |||| || || || || Sbjct 8293283 CAACAACCACTGGGGAGTCTGTCCCAAGACTCTCAAAGTCAGAGTCTTTAATATACAAGT 8293224 Query 2982 CAAGGAGGTCACGACGACCGACGGCACCACGACCATCGCCAACAACCTCACCAGCACCAT 3041 ||| || |||| ||| | |||||||||||||| || | Sbjct 8293223 CAAAGAAGTCATGAC--------------------TTGCCAACAACCTCACGCCCATGGT 8293184 Query 3042 ACAGGTCTTTGCGGACACGGAGTACCAGCTCCCGTACGTGCTCGGCAACGCCCACGAGGG 3101 || |||||||| || | ||||| ||| |||| ||| | || |||| || | ||| Sbjct 8293183 CCACGTCTTTGCTGATTCTGAGTATCAGGTCCCCTACCTTCTGGGCAGTGCAACAGGGGG 8293124 Query 3102 CTGCCTGCCGCCGTTCC 3118 |||||||||| ||||| Sbjct 8293123 CTGCCTGCCGGTGTTCC 8293107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13602717787815