Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq218 80.6 8e-12 >seq218 Length=2497060 Score = 80.6 bits (88), Expect = 8e-12 Identities = 132/189 (70%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 1245 ACATGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTA 1304 || ||| ||||| ||||| || |||| || ||||||||| ||||| || || | || Sbjct 2428777 ACCTGCTGCCACCAGCAAGGCCGACATTGCCAAGGCTATTGTCCATGTTGACCCCT-CTG 2428719 Query 1305 TGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGAT 1364 ||| || | |||| ||| | || ||||||| | ||| || || || || |||| Sbjct 2428718 TGGCCATGTCACCTGGGCCAGCAAGGACTTTCCCTCCAATAGTTGAGTGGACAAGATGAC 2428659 Query 1365 TATCTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCT 1424 | | ||| ||| | || ||||| || || | |||||||| ||||||| || || Sbjct 2428658 TCTTTGGCAGGAAGGAGGAAAAATTACATCCCAGGTGGTGGAGTTGTCCAAGGCCATCCT 2428599 Query 1425 GGGAGGATC 1433 ||||||||| Sbjct 2428598 GGGAGGATC 2428590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14903757867135