Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_006152.1
Length=4642
Score E
Sequences producing significant alignments: (Bits) Value
seq218 82.4 2e-12
>seq218
Length=2497060
Score = 82.4 bits (90), Expect = 2e-12
Identities = 149/213 (70%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 1358 ACCGGCAAGACCAACATCGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTG 1417
||| ||||| || |||| || |||| || | ||| || |||| | ||| ||
Sbjct 2428767 ACCAGCAAGGCCGACATTGCCAAGGCTATTGTCCATGTTGACCCCTCTGT-GGCCATGTC 2428709
Query 1418 AACTGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATG-CTCATTTGGTG 1476
| |||| ||| | ||||||||| ||| || |||||||| ||| ||| || | |
Sbjct 2428708 ACCTGGGCCAGCAAGGACTTTCCCTCCAATAGTTGAGTGGACAAGATGACTCTTTGGCAG 2428649
Query 1477 GGAGGAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTC 1536
| |||||| ||| || || | ||||||| || | |||||||||||||||| || ||
Sbjct 2428648 GAAGGAGGAAAA-ATTACATCCCAGGTGGTGGAGTTGTCCAAGGCCATCCTGGGAGGATC 2428590
Query 1537 AAAGGTGCGGGTCGATCAGAAATGTAAATCCTC 1569
||||| | | || ||||| |||||||||||
Sbjct 2428589 CAAGGTTCACGAGGA-CAGAAGTGTAAATCCTC 2428558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14737414143355
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |