Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq218 82.4 2e-12 >seq218 Length=2497060 Score = 82.4 bits (90), Expect = 2e-12 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 1358 ACCGGCAAGACCAACATCGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTG 1417 ||| ||||| || |||| || |||| || | ||| || |||| | ||| || Sbjct 2428767 ACCAGCAAGGCCGACATTGCCAAGGCTATTGTCCATGTTGACCCCTCTGT-GGCCATGTC 2428709 Query 1418 AACTGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATG-CTCATTTGGTG 1476 | |||| ||| | ||||||||| ||| || |||||||| ||| ||| || | | Sbjct 2428708 ACCTGGGCCAGCAAGGACTTTCCCTCCAATAGTTGAGTGGACAAGATGACTCTTTGGCAG 2428649 Query 1477 GGAGGAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTC 1536 | |||||| ||| || || | ||||||| || | |||||||||||||||| || || Sbjct 2428648 GAAGGAGGAAAA-ATTACATCCCAGGTGGTGGAGTTGTCCAAGGCCATCCTGGGAGGATC 2428590 Query 1537 AAAGGTGCGGGTCGATCAGAAATGTAAATCCTC 1569 ||||| | | || ||||| ||||||||||| Sbjct 2428589 CAAGGTTCACGAGGA-CAGAAGTGTAAATCCTC 2428558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14737414143355