Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_006263.1
Length=4682
Score E
Sequences producing significant alignments: (Bits) Value
seq218 95.1 4e-16
>seq218
Length=2497060
Score = 95.1 bits (104), Expect = 4e-16
Identities = 135/189 (71%), Gaps = 1/189 (1%)
Strand=Plus/Minus
Query 1245 ACCTGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTA 1304
|||||| ||||| ||||| || |||| || ||||||||| ||||| || || | ||
Sbjct 2428777 ACCTGCTGCCACCAGCAAGGCCGACATTGCCAAGGCTATTGTCCATGTTGACCCCT-CTG 2428719
Query 1305 TGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGAT 1364
||| || | |||| ||| | || ||||||| | ||| || || || |||||||
Sbjct 2428718 TGGCCATGTCACCTGGGCCAGCAAGGACTTTCCCTCCAATAGTTGAGTGGACAAGATGAC 2428659
Query 1365 TATCTGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCT 1424
| | ||| ||||| || ||||| || || |||||||||| | | || || || ||
Sbjct 2428658 TCTTTGGCAGGAAGGAGGAAAAATTACATCCCAGGTGGTGGAGTTGTCCAAGGCCATCCT 2428599
Query 1425 GGGAGGATC 1433
|||||||||
Sbjct 2428598 GGGAGGATC 2428590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14865370853955
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |