Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value SEQ18114 98.7 3e-17 >SEQ18114 Length=11168 Score = 98.7 bits (108), Expect = 3e-17 Identities = 119/161 (74%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 1247 ATGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATG 1306 |||| |||||| ||||| ||||||| || ||||||||||| |||||| || |||| || Sbjct 1797 ATGCCACCACCAGCAAGGCCAACATTGCCAAGGCTATTGCCTATGCTG-ACCCTTCTGTG 1739 Query 1307 GATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTA 1366 || || ||||||| |||| ||||||| |||| | ||| || || || |||| || Sbjct 1738 ACCATGTCAAGTGGACCAGCGAGGACTTTCCCTTCACCAGCTGAGTGGACAAGATGACTA 1679 Query 1367 TCTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAA 1407 ||||| ||| || | || || | |||| ||||| ||| Sbjct 1678 TCTGGCAGGAAGAAGAAAAGATTGCATCCAAGGTGGTAGAA 1638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14893076131245