Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value SEQ18114 80.6 9e-12 >SEQ18114 Length=11168 Score = 80.6 bits (88), Expect = 9e-12 Identities = 103/141 (73%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 1558 TGCGACCACCGGAAAGACCAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTATGG 1617 ||| |||||| | ||| ||||||| ||| ||||||||||| |||||| |||||||| || Sbjct 1796 TGCCACCACCAGCAAGGCCAACATTGCCAAGGCTATTGCCTATGCTG-ACCCTTCTGTGA 1738 Query 1618 CTGTGTTAACTGGACTAATGAGAACTTCCCATTTAATGACTGCGTTGATAAAATGCTTAT 1677 | ||| || ||||| | ||| |||| || || | ||| || || || ||| ||| Sbjct 1737 CCATGTCAAGTGGACCAGCGAGGACTTTCCCTTCACCAGCTGAGTGGACAAGATGACTAT 1678 Query 1678 ATGGTGGGAGGAGGGAAAAAT 1698 ||| ||| || | ||| || Sbjct 1677 CTGGCAGGAAGAAGAAAAGAT 1657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16293197905335