Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value SEQ18114 93.3 1e-15 >SEQ18114 Length=11168 Score = 93.3 bits (102), Expect = 1e-15 Identities = 125/173 (72%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 1238 GCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGC 1297 ||||||||| ||||| |||||||||| | || || ||| | || | ||||||| | | Sbjct 1795 GCCACCACCAGCAAGGCCAACATTGCCAAGGCTATTGCCTATGCTGA-CCCTTCTGTGAC 1737 Query 1298 TGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATC 1357 ||||| ||||||| ||| |||||||||||| || || ||||||||| ||| Sbjct 1736 CATGTCAAGTGGACCAGCGAGGACTTTCCCTTCACCAGCTGAGTGGACAAGATGACTATC 1677 Query 1358 TGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCAT 1410 ||| ||| || | ||||| | ||||||| || || | | ||||| |||| Sbjct 1676 TGGCAGGAAGAAGAAAAGATTGCATCCAAGGTGGTAGAATACTCCAAGACCAT 1624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13930891989690