Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value SEQ18114 109 2e-20 >SEQ18114 Length=11168 Score = 109 bits (120), Expect = 2e-20 Identities = 121/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 1248 TGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGG 1307 ||| |||||| ||||| ||||||| || ||||||||||| |||||| || |||| || Sbjct 1796 TGCCACCACCAGCAAGGCCAACATTGCCAAGGCTATTGCCTATGCTG-ACCCTTCTGTGA 1738 Query 1308 ATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATTAT 1367 || || ||||||| |||| ||||||| |||| | ||| || || ||||||| ||| Sbjct 1737 CCATGTCAAGTGGACCAGCGAGGACTTTCCCTTCACCAGCTGAGTGGACAAGATGACTAT 1678 Query 1368 CTGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTGGAA 1407 |||| |||||| | || || | |||||||||| ||| Sbjct 1677 CTGGCAGGAAGAAGAAAAGATTGCATCCAAGGTGGTAGAA 1638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14854716630585