Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_001718.1 Length=5075 Score E Sequences producing significant alignments: (Bits) Value seq97 473 4e-130 >seq97 Length=173707219 Score = 473 bits (524), Expect = 4e-130 Identities = 1125/1662 (68%), Gaps = 65/1662 (4%) Strand=Plus/Minus Query 2925 TTGGTGTGTCTACAGGTACTTTCAATAATCAAACAGAATTTCAATACTTGGGGGAGGGCT 2984 ||||| | |||||||| |||||||||||||||||||||||| ||| |||| |||||| Sbjct 68319026 TTGGTATTTCTACAGGGACTTTCAATAATCAAACAGAATTTGAATTTTTGGAGGAGGGGA 68318967 Query 2985 TGGTTAGAATCACTGCACACGCATCAAGACTCATACATCTAAATATGCCAGAACAC-GAA 3043 ||||| | ||||| || || || ||||| | ||| ||||||||||||| ||| || Sbjct 68318966 TGGTTCGGATCACGGCGCATGCCAGCAGACTTGTGCATTTAAATATGCCAGA-CACTGAG 68318908 Query 3044 ACATACAAAAGAATACATGTACTAAATTC-AGAATCAGGGGTGGC--GGGACAAATGGTA 3100 | |||| |||| | |||| ||||| | | || || |||| | |||| Sbjct 68318907 TCTTACAGAAGAGTTATGGTACATAATTCTACTAACACTTCTGTAAAGGGAAATATGGCT 68318848 Query 3101 CAAGACGATGCACACACACAAATGGTAACACCTTGGTCACTAATAGATGCTAACGCATGG 3160 || || || |||||||| || || || || |||||||| | ||||| || || ||| Sbjct 68318847 TTGGATGACGCGCACACACAGATCGTGACCCCATGGTCACTGGTTGATGCAAATGCTTGG 68318788 Query 3161 GGAGTGTGGTTCAATCCAGCGGACTGGCAGTTAATATCCAACAACATGACAGAAATAAAC 3220 ||||| ||||| || || | ||||||||| | || || |||||||| ||| | | Sbjct 68318787 GGAGTCTGGTTTAACCCCGGAGACTGGCAGATGATCGTTAATAACATGACCGAACTTAGT 68318728 Query 3221 TTAGTTAGTTTTGAACAAGAAATATTCAATGTAGTACTTAAAACAATTACAGAATCAGCA 3280 || || |||||||| |||||||| || ||||| || || |||||| | || ||| | || Sbjct 68318727 TTGGTCAGTTTTGAGCAAGAAATCTT-AATGTGGTGCTCAAAACAGTCACTGAAACTGCC 68318669 Query 3281 ACCTCACCACCAACCAAAATATATAATAATGATCTAACTGCAAGCTTAATGGTCGCACTA 3340 || ||||| | || ||||||| || || || || || || ||||||| || | Sbjct 68318668 ACAACACCAGCTGTTAAGGTATATAACAACGACCTGACAGCTAGTCTAATGGTGGCGTTG 68318609 Query 3341 GACACCAATAACACACTTCCATACACACCAGCAGCACCTAGAAGT--GAAACACTTGGTT 3398 ||| | ||||| || | ||||| || ||||| || | || || |||||| | || | Sbjct 68318608 GACTCTAATAATACTTTACCATATACTCCAGCCGC--CATGAGGTCAGAAACATTGGGCT 68318551 Query 3399 TTTATCCATGGTTACCTACAAAACCAACTCAATACAGATATTACCTATCATGCATCAGAA 3458 | ||||||||| |||| || | |||||||| || ||||||||| | |||||| ||| Sbjct 68318550 TCTATCCATGGATACCAACCACACCAACTCCATGGAGATATTACTTTACATGCAGTAGAC 68318491 Query 3459 ACCTAAATCCACCAACATACACTGGACAATCACAACAAAT--AACAGACTCAAT---ACA 3513 || | |||||||||||||||| ||| || | | ||||||| | || | Sbjct 68318490 TTCTTA---CACCAACATACACTGGTCAA--ACTGGGACTTCAACAGACACGATTGCTCT 68318436 Query 3514 AACAGGACTACACAGTGACATTATGTTCTACACAATAGAAAATGCAGTACCAATTCATCT 3573 || ||| || |||| | ||| || ||| | ||||||||||| || ||||| | Sbjct 68318435 TAC-TGAC--CATGGTGATGTGCAGTTTTATACAGTTGAAAATGCAGTGCCTATTCACTT 68318379 Query 3574 TCTAAGAACAGGAGATGAATTCTCCACAGGAATATATCACTTTGACACAAAACCACTAAA 3633 || |||||||||||||||||||||||||| | || | ||||| |||||| | Sbjct 68318378 GCTTAGAACAGGAGATGAATTCTCCACAGGGACATTTTTTTTTGATTGCAAACCAGTTTC 68318319 Query 3634 ATTAACTCACTCATGGCAAACAAACAGATCTCTAGGACTGCCTCCAAAACT--ACTAACT 3691 ||| || ||| | |||||||| || ||||| || || |||| || | || || ||| Sbjct 68318318 ATTGACACACACGTGGCAAACTAATAGATCACTGGGTTTGCCCCCTCACCTGAACACACT 68318259 Query 3692 GAACCTACCACAGAAGGAGACCAACACCCAGGAAC-ACTACCAGCAGCTAACACAAGAAA 3750 | |||| |||||||||||| ||| || | | | || | |||| || | | Sbjct 68318258 G--CCTAGTCAAGAAGGAGACCAGCACAAGGGCTCTATTGACATAGACCAACAAAAAAGA 68318201 Query 3751 AG-GTTATCACCAAACA-ATTAATAA-TAGCTACACAGAAGCAACAGCAATTAGGCCAGC 3807 | | ||||| |||| || || || | ||||||||||| | || ||||| || Sbjct 68318200 TGTGGCGTCACCCAACAGGGCAACAACTATGT-TACAGAAGCAACTGTTATGAGGCCCGC 68318142 Query 3808 TCAGGTAGGATATAATACACCATACATGAATTTTGAATACTCCAATGGTGGACCATTTCT 3867 |||||| || || ||| || || | | |||||||| | | || || ||| Sbjct 68318141 TCAGGTTGGTTACTGTACGCCCTATAACAGTTTTGAATGTGCGGCCAGGGGTCCTTTTAA 68318082 Query 3868 AACTCCTATAGTACCAACAGCA---GACACACAATATAATGATGATGAACCAAATG---G 3921 |||||| || || ||| ||| | | | | || || | | | ||| |||||| | Sbjct 68318081 AACTCCAATTGTTCCAGCAGTAGGGGGCGCTGAAAATGACTACCAAGAAGCAAATGGCTG 68318022 Query 3922 TGCTATAAGATTTACAATGGATTACCAACATGGACACTTAACCACATCTTCACAAGAGCT 3981 | ||| | |||| ||| ||| | |||||||| || ||||| ||| |||| | | | Sbjct 68318021 TCCTAGACTATTT-CAA-GGA-AAACAACATGGGCAGTTAACTACA--GACACAGGTGAT 68317967 Query 3982 AG-----AAAGATACACATTCAATCCACAAAGTAAATGTGGAAGAGCTCCAAAGCAACAA 4036 | ||| ||||||| |||| |||| | ||| |||||||| | | || Sbjct 68317966 GGTCCTCAAAAGTACACATATTATCCCAAAAGCCATACTGGCAGAGCTCCTCA-TAGCAT 68317908 Query 4037 TTTAATCAACAGGCACC--ACTAAACC-TAGAAAATACAAATAATGGAACACTTTTACCT 4093 | || |||||| | ||| || || | |||| || || ||||| ||| Sbjct 68317907 GTGGGTC--CAGGCAGCTGACTTGGCCATACCAGCTACAGCGGCGGGCACCCTTTTGCCT 68317850 Query 4094 TCAG---ATCCAATAGGAGGGAAATCTAACATGCATTTCATGAATACACTCAATACATAT 4150 || || || | ||| ||| | | || ||||| |||||| ||| || ||| Sbjct 68317849 GGAGAAAATTCAGTTCCAGGTAAAAGTGATATTCATTTTTATAATACATACAACACCTAT 68317790 Query 4151 GGACCATTAACAGCACTAAACAATACTGCACCTGTATTTCCAAATGGTCAAATATGGGAT 4210 ||||| | || || || ||||| || | || | | ||| ||||||||||| ||||| Sbjct 68317789 GGACCTCTTACTGCTCTGAACAACACGCCTCCAATTTGTCCTAATGGTCAAATTTGGGAC 68317730 Query 4211 AAAGAACTTGATACAGATCTAAAACCTAGACTACATGTTACAGCTCCATTTGTTTGTAAA 4270 |||||||| ||| || ||||||| ||||| || ||| |||||||||||||||||| Sbjct 68317729 AAAGAACTGGATTGTGACTTAAAACCCAGACTGCACATTAATGCTCCATTTGTTTGTAAA 68317670 Query 4271 AACAATCCACCAGGACAACTATTTGTAAAAATAGCACCAAACCTAACAGATGATTTCAAT 4330 ||||| || || || ||||| || ||| ||||||||||||| || || | | || Sbjct 68317669 AACAACTGTCCTGGGCAGCTATTGGTTAAAGTAGCACCAAACCTTACTGACCAATATGAT 68317610 Query 4331 GCTGACTCTCCTCAACAACCTAGAATAATAACTTATTCAAACTTTTGGTGGAAAGGAACA 4390 | || | | || ||| |||| | || || || | |||||||||||||| | Sbjct 68317609 CCCAACACACTGCAGACTCCTCGAATCGTTACCTACTCTGATTTTTGGTGGAAAGGCAAG 68317550 Query 4391 CTAACATTCACAGCAAAAAT--GAGATCCAGTAATATGTGGAACCCTATTCAACAACACA 4448 ||| ||||||||| ||| | | | |||| ||| |||||||| ||| | |||| | Sbjct 68317549 CTAGTATTCACAGCCAAACTCAGGGCTCCA--CATACATGGAACCCCATTAACCAACTTA 68317492 Query 4449 CAACAACAGCAGAAAACATTGGTAACTATATTCCTACAAATATTGGTGGCATAAGAATGT 4508 | || || ||| ||||| ||||| || |||||||| ||||| || || | | | Sbjct 68317491 CTACTACCCAAGACAACATCAAAAACTACATGCCTACAAACATTGGGGGAAT--GGTTCT 68317434 Query 4509 T--TCCAGAATATTCACAACTTATACCAAGAAAATTATACTA 4548 | |||||| ||||| || | ||||||||| | ||||| Sbjct 68317433 TCATCCAGAGTATTCTCAGTTAGCCCCAAGAAAACTTTACTA 68317392 Score = 241 bits (266), Expect = 4e-60 Identities = 530/777 (68%), Gaps = 32/777 (4%) Strand=Plus/Plus Query 364 GAAGCATTCTCTTATGTATTTAAAACACAAAAAGTCAATCTAAATGGAAAAGAAATTGCT 423 ||||| ||||| | ||| ||| |||| | || || | || ||||||||||| |||| Sbjct 68316212 GAAGCCTTCTCGTTTGTTTTTGAAACTGAGAACGTTCAGCTCAATGGAAAAGATATTGAC 68316271 Query 424 TGGAATAACTACAACAAAGATACA-ACAGATGCGGAAATGATAAACCTACAAAGAGGAGC 482 ||||| |||||||||| | | | ||| | | |||| ||| || |||| | Sbjct 68316272 TGGAAAGACTACAACAAGAAAATAGACA-ACGAGGAACTGACTTCACTGTTGCGAGGCAC 68316330 Query 483 AGAAACATCATGGGACCAGGCAACAGACATGGAATGGGAATCAGAAATCGACAGCCTCAC 542 ||||| | |||| || || |||||||||||||| | || | || | ||||| Sbjct 68316331 TGAAACTGCGAGGGATCAAGCCGAAGACATGGAATGGGGAGATCAACTGGATACACTCAC 68316390 Query 543 AAAACGGCAAGTACTG-ATTTTTGACTCTCTTGTTAAAAAATGTCTCTTTGAAGGTATAT 601 ||| ||||||| ||| | ||| || || ||||||||||||| ||||||| | Sbjct 68316391 CAAAAGGCAAGT-CTGCAGCCATGATGCTGTTATTAAAAAATGTCTTTTTGAAGTAGTGC 68316449 Query 602 TGCAAAAGAACCTAAGTCCAAGTGACTGCTACTGGTTCATACAGCATGAACATGGTCAAG 661 || | || || || |||| | || | |||| ||| || | ||| |||| ||| Sbjct 68316450 TGAACAAAAATGTAGAGCCAAAAGCATGTTTATGGTACATTCAACTTGAGTATGGAAAAG 68316509 Query 662 AT----ACTGGCTATCACTGCCATGTACTACTAGGTGGAAAAGGCTTACAACAAGCAATG 717 || | |||| ||||||||||||| || || ||||| | || | |||| Sbjct 68316510 ATCAAAAATGGC----ACTGCCATGTACTGCTGACCGGCAAAGGACTCCAGCGAGCACAA 68316565 Query 718 GGAAAATGGTTCAGAAAACAATTAAACAATTTATGGAGTAGATGGTTAATAATGCAATGC 777 || ||| ||||| | | ||| |||| | | ||||| ||||||||| | | || Sbjct 68316566 GGCAAAGGGTTCCGCAGACAGCTAAATGTTCTTTGGAGCAGATGGTTAGTTACTATGTGT 68316625 Query 778 AAAGTACCTCTAACACCAGTTGAAAGAATAAAATTAAGGGAATTAGCAGAGGATGGTGAG 837 |||| || |||||| |||| |||| ||| | | ||| | || || || ||| Sbjct 68316626 TCTGTACAACTTTCACCAGCTGAACGAATCAAACTGCGTGAAATTGCCGAAGACTCTGAA 68316685 Query 838 TGGGTATCGCTACTAACCTACACTCACAAACAAACTAAAAAACAATATACAAAAATGACT 897 ||||| ||||| |||||||| |||||||| ||||| |||||| | |||||||||||| | Sbjct 68316686 TGGGTCTCGCTGCTAACCTATACTCACAAGCAAACCAAAAAAGACTATACAAAAATGGTT 68316745 Query 898 CATTTTGGAAATATGATTGCTTACTACTTCCTAAATaaaaaaaGAAAGACAA----CTGA 953 || |||||||||||| ||||||| || || ||| |||||||| || | |||| Sbjct 68316746 CACTTTGGAAATATGGTTGCTTATTATTTTTTAA--CCAAAAAGAA--ACTATGCTCTGA 68316801 Query 954 A--AGAGAGCA----TGGATATTATCTCAGCTCAGATTCTGGCTTCATGACAAATTTCTT 1007 | | | |||| || || ||| ||||| |||||| ||| | || ||||| | Sbjct 68316802 ACCAAATAGCAGATCAGGCTACTATACTAGCTCCGATTCTAGCTGGAAAACTAATTTTAT 68316861 Query 1008 AAAAGAAGGCGAGAGACACTTAGTCAG-TCACCTATTTACTGAAGCAAAT-AAACCTGAA 1065 ||||||| || | || || ||||| ||| || | ||||| ||||||| ||||| ||| Sbjct 68316862 GAAAGAAGCAGACCGTCATTTGGTCAGCTCA-CTTTATACTG-AGCAAATGAAACCAGAA 68316919 Query 1066 ACTGTGGAAACAACGGTTACTACAGCTCAGGAAGCCAAA-AGAGGCAGAATACAAAC 1121 || || || || || || || ||||| || | ||| ||| | || |||| ||||| Sbjct 68316920 ACGGTCGAGACCACAGTAACCACAGCCCAAG-AGCAAAAGCGCGGGCGAATTCAAAC 68316975 Score = 156 bits (172), Expect = 1e-34 Identities = 169/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 2399 CCAGGATACAAATACCTTGGTCCAGGAAACTCACTAGACCAAGGAGAACCAACTAATCCA 2458 || || ||||| ||||| || ||||| ||| || |||||||||||||||| || || Sbjct 68319554 CCGGGCTACAAGTACCTGGGACCAGGGAACAGCCTTAACCAAGGAGAACCAACCAACCCT 68319495 Query 2459 TCAGACGCCGCAGCAAAAGAACACGACGAAGCCTACGACAAATACATAAAATCTGGAAAA 2518 || ||||| || || ||||| ||||||||||| |||||| ||||||| |||||||| | | Sbjct 68319494 TCTGACGCTGCGGCCAAAGAGCACGACGAAGCATACGACCAATACATTAAATCTGGTAGA 68319435 Query 2519 AATCCATACTTCTACTTCTCAGCAGCTGATGAAAAATTCATAAAAGAAACTGAACACGCA 2578 ||||| ||| | ||||| ||| | |||||| || || || | |||| | |||| Sbjct 68319434 AATCCTTACCTTTACTTTTCACCTGCTGATCAACGCTTTATTGACAAAACAGCTGACGCC 68319375 Query 2579 AAAGACTACGGAGGTAAAATTGGACATTACTTCTTCAGAGCAAA 2622 ||||||| ||||| || |||||||| ||||| | ||||| Sbjct 68319374 AAAGACTGGGGAGGACGCATCGGACATTATTTCTTTCGTGCAAA 68319331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16127831538000