Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq297 78.8 3e-11 >seq297 Length=62275575 Score = 78.8 bits (86), Expect = 3e-11 Identities = 131/187 (70%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 1243 GGACATGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTC 1302 |||| ||| |||||| ||| ||||| || || ||||||||||||||| || | | Sbjct 15237807 GGACCTGCCACCACCATCAAATTCAACACTGCCAAGACTATTGCCCATGCTGACCCCT-C 15237865 Query 1303 TATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATG 1362 | ||| || || || ||| | || |||||| || ||| ||| || || | ||| Sbjct 15237866 TGTGGCCATGTCAAATGTGCCAGCAAGGGCTTTCCCTTTAACAGCTGAGTGGACACCATG 15237925 Query 1363 ATTATCTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATT 1422 |||||||||| | || | || || || |||| |||||||| || |||||| | | Sbjct 15237926 ATTATCTGGTAAGTAGAAGAAAAGATTACATCCAAGGTGGTGGAGTCATCCAAGGTCA-T 15237984 Query 1423 CTGGGAG 1429 ||||||| Sbjct 15237985 CTGGGAG 15237991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14908644272925