Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq297 80.6 8e-12 >seq297 Length=62275575 Score = 80.6 bits (88), Expect = 8e-12 Identities = 117/164 (71%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 1243 GGACCTGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTC 1302 |||||||| |||||| ||| ||||| || || ||||||||||||||| || | | Sbjct 15237807 GGACCTGCCACCACCATCAAATTCAACACTGCCAAGACTATTGCCCATGCTGACCCCT-C 15237865 Query 1303 TATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATG 1362 | ||| || || || ||| | || |||||| || ||| ||| || || | ||| Sbjct 15237866 TGTGGCCATGTCAAATGTGCCAGCAAGGGCTTTCCCTTTAACAGCTGAGTGGACACCATG 15237925 Query 1363 ATTATCTGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTGGA 1406 |||||||||| | ||| | || || || ||||||||||||| Sbjct 15237926 ATTATCTGGTAAGTAGAAGAAAAGATTACATCCAAGGTGGTGGA 15237969 Score = 78.8 bits (86), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 1243 GGACCTGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTC 1302 |||||||| |||||| ||| ||||| || || ||||||||| ||||| || | | Sbjct 15282916 GGACCTGCCACCACCATCAAATTCAACACTGCCAAGACTATTGCCCGTGCTGACCCCT-C 15282974 Query 1303 TATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATG 1362 | ||| | || || || |||| | || |||||| || ||| ||| || || | ||| Sbjct 15282975 TGTGGCTATGTCAAATGTACCAGCAAGGGCTTTCCCTTTAACAGCTGAGTGGACAGCATG 15283034 Query 1363 ATTATCTGGTGGGAAGAGGGCAAAATGACCGCCAAGG-TGGTGGAAACGGCTAAAGCGAT 1421 |||||||||| | ||| | || || || |||||| |||||| | | || | | Sbjct 15283035 ATTATCTGGTAAGTAGAAGAAAAGATTACATCCAAGGTTGGTGG--TCTTCCAAGGTCA- 15283091 Query 1422 TCTGGGAGGATCT 1434 ||||||||||||| Sbjct 15283092 TCTGGGAGGATCT 15283104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14870244674025