Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq97 120 2e-23 seq80 120 2e-23 seq1 114 7e-22 >seq97 Length=173707219 Score = 120 bits (132), Expect = 2e-23 Identities = 269/390 (69%), Gaps = 13/390 (3%) Strand=Plus/Plus Query 6948 GCATCCACACCAATGTGCGCTTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGG 7007 ||||| ||||||||||| || |||||||| || |||||||| || |||||||||||||| Sbjct 173429909 GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGA 173429968 Query 7008 TGCATCTCTGGGTCACGCTTGCCGCT-GCCATTCTTGGTCGAACTGGGCGCGGCAATCAG 7066 |||||||| || || || |||| ||| ||||||||||| ||||| || |||| | Sbjct 173429969 TGCATCTCCGGATCGCG-TTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGAT 173430027 Query 7067 CGAGGCGTCGACCACCGTGCACGTCTTTGAGCAGGTAGCC--CTTCGCACTGAGTTGCGC 7124 | ||| ||||||| |||| | | | | || | ||| ||||| | | ||| Sbjct 173430028 GGTGGCATCGACCAAGGTGC-CTTGAGTCATCATGACGCCTGCTTCGGCCAG-CCAGCG- 173430084 Query 7125 GTTGACGGTCTGCAGAAATTGCTCGGCTAACTGGTGTCGCTCCAGCAAGTGCCGAAAGCG 7184 |||| ||||| | ||||| ||| | || || ||||||||| ||| || || Sbjct 173430085 ATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCAGGTGGCGGAAATT 173430144 Query 7185 CAGAATGCTGACCCGGTCCGGCAGTCGGCTTATGC-CTCCCAGCCCCGCGAATTGCCG-A 7242 || ||| || |||||||||| || ||| | | || || || | || | Sbjct 173430145 CATGATGGTGGTGCGGTCCGGCAAGGCGC-TATCCAGGGATAACCGGGCAAACAGACGCA 173430203 Query 7243 TACAACGGC-ACGTCGTACAGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTG 7301 | | ||| | |||||||| || ||||||||||| | || |||| | |||| || Sbjct 173430204 TGGA--GGCGATTTCGTACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATG 173430261 Query 7302 CTGCAGAAAGTGGATGCGCAGCATCGTTTC 7331 ||||| |||| ||||| ||||| ||||| Sbjct 173430262 CTGCATGCAGTGAATGCGTAGCATGGTTTC 173430291 >seq80 Length=184226339 Score = 120 bits (132), Expect = 2e-23 Identities = 269/390 (69%), Gaps = 13/390 (3%) Strand=Plus/Minus Query 6948 GCATCCACACCAATGTGCGCTTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGG 7007 ||||| ||||||||||| || |||||||| || |||||||| || |||||||||||||| Sbjct 157607719 GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGA 157607660 Query 7008 TGCATCTCTGGGTCACGCTTGCCGCT-GCCATTCTTGGTCGAACTGGGCGCGGCAATCAG 7066 |||||||| || || || |||| ||| ||||||||||| ||||| || |||| | Sbjct 157607659 TGCATCTCCGGATCGCG-TTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGAT 157607601 Query 7067 CGAGGCGTCGACCACCGTGCACGTCTTTGAGCAGGTAGCC--CTTCGCACTGAGTTGCGC 7124 | ||| ||||||| |||| | | | | || | ||| ||||| | | ||| Sbjct 157607600 GGTGGCATCGACCAAGGTGC-CTTGAGTCATCATGACGCCTGCTTCGGCCAG-CCAGCG- 157607544 Query 7125 GTTGACGGTCTGCAGAAATTGCTCGGCTAACTGGTGTCGCTCCAGCAAGTGCCGAAAGCG 7184 |||| ||||| | ||||| ||| | || || ||||||||| ||| || || Sbjct 157607543 ATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCAGGTGGCGGAAATT 157607484 Query 7185 CAGAATGCTGACCCGGTCCGGCAGTCGGCTTATGC-CTCCCAGCCCCGCGAATTGCCG-A 7242 || ||| || |||||||||| || ||| | | || || || | || | Sbjct 157607483 CATGATGGTGGTGCGGTCCGGCAAGGCGC-TATCCAGGGATAACCGGGCAAACAGACGCA 157607425 Query 7243 TACAACGGC-ACGTCGTACAGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTG 7301 | | ||| | |||||||| || ||||||||||| | || |||| | |||| || Sbjct 157607424 TGGA--GGCGATTTCGTACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATG 157607367 Query 7302 CTGCAGAAAGTGGATGCGCAGCATCGTTTC 7331 ||||| |||| ||||| ||||| ||||| Sbjct 157607366 CTGCATGCAGTGAATGCGTAGCATGGTTTC 157607337 >seq1 Length=282763074 Score = 114 bits (126), Expect = 7e-22 Identities = 111/140 (79%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 6948 GCATCCACACCAATGTGCGCTTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGG 7007 ||||| ||||||||||| || |||||||| || |||||||| || |||||||||||||| Sbjct 162985023 GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGA 162985082 Query 7008 TGCATCTCTGGGTCACGCTTGCCGCT-GCCATTCTTGGTCGAACTGGGCGCGGCAATCAG 7066 |||||||| || || || |||| ||| ||||||||||| ||||| || |||| | Sbjct 162985083 TGCATCTCCGGATCGCG-TTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGAT 162985141 Query 7067 CGAGGCGTCGACCACCGTGC 7086 | ||| ||||||| |||| Sbjct 162985142 GGTGGCATCGACCAAGGTGC 162985161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27327706394800