Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_001954.1 Length=8454 Score E Sequences producing significant alignments: (Bits) Value seq22961 107 1e-19 >seq22961 Length=226 Score = 107 bits (118), Expect = 1e-19 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 6535 AAGGTCAAATTCAGCAACAACTGGCAGAAGCAGAAACGCAAAATACAGTGTCTGCATTCC 6594 || || |||||||| | |||||| | ||||| || ||||| || || || || | Sbjct 21 AAAGTAAAATTCAGTGAAAACTGGAAAAAGCAAAACCGCAAGATTCAAAAGCTACACAGC 80 Query 6595 CGTATCGCAAATATCCGCAGAGACTACCTTCATAAAGTCACAACGACCGTCAGCAAAAAC 6654 | || || ||||| ||| |||||| | ||||||||||| || | ||||||||||| Sbjct 81 CACATTGCTAATATTCGCCATGACTACTTGCATAAAGTCACCACCCGCATCAGCAAAAAC 140 Query 6655 CACGCAATGATAGTCATTGAGGATTTGAAGGTCAGCAACATGTCAAAGTCAG-CAGCGGG 6713 ||||| ||||| | ||||||||| |||||| || ||||| || |||| ||||||| Sbjct 141 CACGCCATGATTGCTTGTGAGGATTTAAAGGTCGCTAATATGTCGAAATCAGCCAGCGGG 200 Query 6714 TACGGT 6719 | |||| Sbjct 201 T-CGGT 205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26914168328640