Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_015586.1 Length=5819 Score E Sequences producing significant alignments: (Bits) Value seq39983 138 4e-29 >seq39983 Length=406000 Score = 138 bits (152), Expect = 4e-29 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 4968 GGTTTTTGCGTTTGCGAGGCCCGGCATCGACAGCGCT-ACCAGCGCGACGACCGCAGCCG 5026 || ||||||||| |||| ||| || | || ||| |||||||||| |||||||| Sbjct 141773 GGATTTTGCGTTCGCGACGCCGGGAAGGCTCA-CGCACACCAGCGCGATCACCGCAGCGA 141831 Query 5027 CCGCGCCCATTCGGTCCAGCATCAACCGCCAGAGCGCACGTTCGGTTGCCGTCGTTGCGC 5086 |||||| || | ||||| ||||| ||||||||| ||||| || |||| | || | Sbjct 141832 CCGCGCTCAACCTGTCCAACATCAGTTTCCAGAGCGCGCGTTCAGTGGCCGACTGCGCTC 141891 Query 5087 GCTCTGCATGAATCATGGCGATCCAAGTCGGGCCATCGAGCTTCGCCAGCGCGCAAATTT 5146 |||| ||||||||||| || | ||| || ||||| || ||||||||| ||||||| || Sbjct 141892 GCTCGGCATGAATCATCGCCAGCCACGTAGGGCCGTCCGCCTTCGCCAGAGCGCAAAGTT 141951 Query 5147 GCGCAATTCGTTCATCTG 5164 |||||||||| || |||| Sbjct 141952 GCGCAATTCGCTCGTCTG 141969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18493147339200