Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_021569.1
Length=7069
Score E
Sequences producing significant alignments: (Bits) Value
seq39983 221 5e-54
>seq39983
Length=406000
Score = 221 bits (244), Expect = 5e-54
Identities = 229/300 (76%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 4189 CGGCGGCGCGCCGGGGCCGACGACAGGGCGCCTCTACAAGAAGTCAGGCAAGACGGTTCA 4248
||| || || || || ||||| || |||||||| ||||||||| | ||||| |||
Sbjct 145701 CGGTGGTGCACCCGGTCCGACCACGGGGCGCCTGTACAAGAAGAGCGATAAGACCGTTGC 145760
Query 4249 GAAGGTCGTCGCGGAGTTCAAGGCGGCCATTGAGGGCGCTCCCATCCTGTCGAAGGTCAA 4308
|| ||||| || || |||||| | ||||||||||||||||| || || || ||||| ||
Sbjct 145761 CAAAGTCGTGGCCGACTTCAAGTCCGCCATTGAGGGCGCTCCGATTCTCTCCAAGGTGAA 145820
Query 4309 AGGCTTCTTCGGTAGCTGTACCGGCGGTGGCAGCTGCCCAACCGCCACGTGGGACGGTGG 4368
||| ||||||||| | || || |||||||| |||||||| | || ||||||||||||
Sbjct 145821 AGGTTTCTTCGGTGGTTGCACGGGCGGTGGTAGCTGCCCCAACGAGGTGTGGGACGGTGG 145880
Query 4369 GCAGTACGCCGGAAAGTTCGACCTTGGCGCGCTGTGTTCCGGCCCACTGTTACAACTTTT 4428
||||||||||| ||||||||||| | |||||||| || || ||| | ||| ||
Sbjct 145881 CCAGTACGCCGGCAAGTTCGACCTCTCCAGCCTGTGTTCGGGGCCGCTGCTGTCACTGTT 145940
Query 4429 CCAGTACGCCGGGTTTGTGTTTCTTGCGGGCATGGGCATCGTCGCGCTGAGGTGGGCACT 4488
| ||| ||||| || |||||||| |||||| || | || || ||||||||||| ||
Sbjct 145941 TGGATTCGCGGGGTTCGTCTTTCTTGCCGGCATGAGCGTGGTTGCCCTGAGGTGGGCGCT 146000
Score = 147 bits (162), Expect = 1e-31
Identities = 134/169 (79%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 91 ACCAGCGCGACGACCGCAGCCGCCGCGCTCATTCTGTCCAGCATGAGGCGCCAGAGGGCC 150
|||||||||| |||||||| ||||||||| ||||||| ||| || |||||| ||
Sbjct 141810 ACCAGCGCGATCACCGCAGCGACCGCGCTCAACCTGTCCAACATCAGTTTCCAGAGCGCG 141869
Query 151 CGCTCGGTTGCCGACGTGGCGCGCTCGGCATGGATCATCGCGATCCAGGTGGGGCCGTCC 210
|| || || |||||| || ||||||||||| |||||||| | ||| || |||||||||
Sbjct 141870 CGTTCAGTGGCCGACTGCGCTCGCTCGGCATGAATCATCGCCAGCCACGTAGGGCCGTCC 141929
Query 211 AGCTTCGCAAGGGCGCAAATCTGCGCAATTCGCTCATCGGCCAGCGGCG 259
|||||| || ||||||| |||||||||||||| || |||| ||||
Sbjct 141930 GCCTTCGCCAGAGCGCAAAGTTGCGCAATTCGCTCGTCTGCCACTGGCG 141978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 22486023503840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |