Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_021569.1 Length=7069 Score E Sequences producing significant alignments: (Bits) Value seq39983 221 5e-54 >seq39983 Length=406000 Score = 221 bits (244), Expect = 5e-54 Identities = 229/300 (76%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 4189 CGGCGGCGCGCCGGGGCCGACGACAGGGCGCCTCTACAAGAAGTCAGGCAAGACGGTTCA 4248 ||| || || || || ||||| || |||||||| ||||||||| | ||||| ||| Sbjct 145701 CGGTGGTGCACCCGGTCCGACCACGGGGCGCCTGTACAAGAAGAGCGATAAGACCGTTGC 145760 Query 4249 GAAGGTCGTCGCGGAGTTCAAGGCGGCCATTGAGGGCGCTCCCATCCTGTCGAAGGTCAA 4308 || ||||| || || |||||| | ||||||||||||||||| || || || ||||| || Sbjct 145761 CAAAGTCGTGGCCGACTTCAAGTCCGCCATTGAGGGCGCTCCGATTCTCTCCAAGGTGAA 145820 Query 4309 AGGCTTCTTCGGTAGCTGTACCGGCGGTGGCAGCTGCCCAACCGCCACGTGGGACGGTGG 4368 ||| ||||||||| | || || |||||||| |||||||| | || |||||||||||| Sbjct 145821 AGGTTTCTTCGGTGGTTGCACGGGCGGTGGTAGCTGCCCCAACGAGGTGTGGGACGGTGG 145880 Query 4369 GCAGTACGCCGGAAAGTTCGACCTTGGCGCGCTGTGTTCCGGCCCACTGTTACAACTTTT 4428 ||||||||||| ||||||||||| | |||||||| || || ||| | ||| || Sbjct 145881 CCAGTACGCCGGCAAGTTCGACCTCTCCAGCCTGTGTTCGGGGCCGCTGCTGTCACTGTT 145940 Query 4429 CCAGTACGCCGGGTTTGTGTTTCTTGCGGGCATGGGCATCGTCGCGCTGAGGTGGGCACT 4488 | ||| ||||| || |||||||| |||||| || | || || ||||||||||| || Sbjct 145941 TGGATTCGCGGGGTTCGTCTTTCTTGCCGGCATGAGCGTGGTTGCCCTGAGGTGGGCGCT 146000 Score = 147 bits (162), Expect = 1e-31 Identities = 134/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 91 ACCAGCGCGACGACCGCAGCCGCCGCGCTCATTCTGTCCAGCATGAGGCGCCAGAGGGCC 150 |||||||||| |||||||| ||||||||| ||||||| ||| || |||||| || Sbjct 141810 ACCAGCGCGATCACCGCAGCGACCGCGCTCAACCTGTCCAACATCAGTTTCCAGAGCGCG 141869 Query 151 CGCTCGGTTGCCGACGTGGCGCGCTCGGCATGGATCATCGCGATCCAGGTGGGGCCGTCC 210 || || || |||||| || ||||||||||| |||||||| | ||| || ||||||||| Sbjct 141870 CGTTCAGTGGCCGACTGCGCTCGCTCGGCATGAATCATCGCCAGCCACGTAGGGCCGTCC 141929 Query 211 AGCTTCGCAAGGGCGCAAATCTGCGCAATTCGCTCATCGGCCAGCGGCG 259 |||||| || ||||||| |||||||||||||| || |||| |||| Sbjct 141930 GCCTTCGCCAGAGCGCAAAGTTGCGCAATTCGCTCGTCTGCCACTGGCG 141978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22486023503840