Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq9666 167 7e-38 >seq9666 Length=8596230 Score = 167 bits (184), Expect = 7e-38 Identities = 261/372 (70%), Gaps = 1/372 (0%) Strand=Plus/Plus Query 1288 AGTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACA 1347 ||||| |||| | ||| |||||||| | | | ||||| || ||| | ||||| | || Sbjct 2063193 AGTTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCA 2063252 Query 1348 TCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGA 1407 ||| |||||| || |||| ||||||| || || || || | ||||||||| ||||||| Sbjct 2063253 TCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGA 2063312 Query 1408 ACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGA 1467 |||| || ||||| ||||| || || ||||||||||| ||||||||||| || ||||||| Sbjct 2063313 ACTTGCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGA 2063372 Query 1468 CCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGC-GCGTGGAC 1526 | || | || ||||| || ||||||||| | || || |||| | || || Sbjct 2063373 CTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGAT 2063432 Query 1527 CAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTCCAACACC 1586 || ||||| || || | || || || || || || || | | ||| || || Sbjct 2063433 CAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACA 2063492 Query 1587 AACATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCCGTTGCAA 1646 | | ||| || ||| |||| |||||| || ||||| ||||| || || ||| | Sbjct 2063493 TATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAG 2063552 Query 1647 GACCGGATGTTC 1658 || | |||||| Sbjct 2063553 GAAAGAATGTTC 2063564 Score = 143 bits (158), Expect = 8e-31 Identities = 446/680 (66%), Gaps = 39/680 (6%) Strand=Plus/Plus Query 2872 TCCTCGGGAAATTGGCATTGCGATTCCACATGG-ATGGGCGACAGAGTCATCACCACCAG 2930 ||||| ||||| |||||| | ||||| |||| | ||| | || ||||||| | Sbjct 2064865 TCCTCAGGAAACTGGCAT-GTGATTCTCAATGGGAAGGGAATC----TCGTCACCACTCG 2064919 Query 2931 ---CACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAACAAATTTCCAG 2987 |||| |||| |||| || ||| || | ||||| | |||||||| || ||| || Sbjct 2064920 TTCCACCAGAACTTGGGTGCTCCCCTCCGATGACAACAATCTCTACAAGCAGATTAA-AG 2064978 Query 2988 CCAATCAGGAGCCTCGAACGACAATCACTACTTTGGCTACAGCACCCCTTGGGGGTATTT 3047 | || ||||| ||||| |||||| ||||||||||||||| ||| || | Sbjct 2064979 GCGAT-----GCCTC---CGACATGTCCTACTTGGGCTACAGCACCCCT-GGGCCTACCT 2065029 Query 3048 TGACTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAAAGACTCATCAACAA 3107 ||||||||||||||||| ||||||| || || ||||| || | ||||||||||| Sbjct 2065030 CGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAA 2065089 Query 3108 CAACTGGGGATTCCGACCCAAGAGACTCAACTTCAAGCTCTTTAACATTCAAGTCAAAGA 3167 | ||||||| ||||||| ||| | |||| | || ||||| ||||| || || Sbjct 2065090 CTACTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGA 2065149 Query 3168 GGTCACGCAGAATGACGGTACGACGACGATTGCCAATAACCTTACCAGCACGGTTCAGGT 3227 ||||| | || | || || | ||| |||||||||||||| || || | ||| | Sbjct 2065150 GGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGAT 2065209 Query 3228 GTTTAC---TGACTCGGAGTACCAGCTCCCGTACGTCCTCGGCTCGGCGCATCAAGGATG 3284 ||| | |||| | |||||||| || || || | || || | | || || Sbjct 2065210 TTTTGCAGATGACAC---ATACCAGCTGCCCTATGTGATTGGAAATGCCACTGAGGGGTG 2065266 Query 3285 CCT-CCCGCCGTTCCCAGCAGACGTCTTCATGGTGCCACAGTATGGATACCTCACCCTGA 3343 | | ||||| ||||| | || || || ||| |||| ||||| | ||| |||| || Sbjct 2065267 CTTGCCCGCTTTTCCC-GGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCACCGTGC 2065325 Query 3344 ACA----------ACGGGAGTCAGGCAGTA--GGACGCTCTTCATTTTACTGCCTGGAGT 3391 | | | || | || | || |||||| | ||||| ||||| || | Sbjct 2065326 ATACGAAGAGCAGAGGGAACACATCCCCTACTCCACGCTCAGCTTTTTATTGCCTAGAAT 2065385 Query 3392 ACTTTCCTTCTCAGATGCTGCGTACCGGAAACAACTTTACCTTCAGCTACACTTTTGAGG 3451 ||||| | ||||||||| | ||||| || || || | || || | ||||| | Sbjct 2065386 ACTTTTCCAGTCAGATGCTTTGCACCGGCAATAATTTCAGTTTTCAATATGCCTTTGAAG 2065445 Query 3452 ACGTTCCTTTCCACAGCAGCTACGCTCACAGCCAGAGTCTGGACCGTCTCATGAATCCTC 3511 || | ||||| ||| ||| || || | || || || | |||| || || | Sbjct 2065446 ACCTCCCTTTTCACTCTTGCTTTGCGCATAATCAAAGAGTGACTCATCTCTCCAACCCCC 2065505 Query 3512 TCATCGACCAGTACCTGTAT 3531 | ||||||||||||| ||| Sbjct 2065506 TTGTCGACCAGTACCTATAT 2065525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14859048468960