Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq9666 333 9e-88 seq3329 80.6 9e-12 >seq9666 Length=8596230 Score = 333 bits (368), Expect = 9e-88 Identities = 541/768 (70%), Gaps = 27/768 (4%) Strand=Plus/Plus Query 1209 AACTATAGCAACCTTGTTGATTGGCTCATTGAAATGGGGATAACATCTGAGAAGCAATGG 1268 || || ||| | |||| || ||||| | |||| || ||||| ||||||| |||||| Sbjct 2062908 AAATACAGCGAGGTTGTGGACTGGCTAGTCGAAAACGGAATAACTTCTGAGAGACAATGG 2062967 Query 1269 CTCACTGAGAACCGAGAGAGCTACAGAAGCTTTCAAGCAACTTCTTCAAATAA--TAGAC 1326 || ||| ||| | ||| | ||||| ||| ||| ||||| || | || Sbjct 2062968 CTG-CTG-GAAGACAAAGA-------ATCCTTTC--GCAGCTT--TCAAACAAGCTCAAC 2063014 Query 1327 AAGTGAAAGCTGCACTGGAAAATGCCCGTGCTGAAATGTTATTGACAAAGACTGCAACTG 1386 | | || |||||||| || || | || |||||| | |||| ||| | || | Sbjct 2063015 AGG-----GCAGCACTGGAGAACGCGCAAGCCGAAATGCTCCTGACGAAGTCGGCCGAAG 2063069 Query 1387 ATTACCTGATAGGAAAAGACCCTGTCCTGGATATAACTAAGAATAGGGTCTATCAAATTC 1446 | |||||| |||| || || ||| ||| | || ||||| | ||| | ||| | Sbjct 2063070 ACTACCTGCTAGGCAAGCTTCCAGTCGGGGACACCACCAAGAACAAGGTGTTCCAACGTT 2063129 Query 1447 TGAAAATGAATAACTACAACCCTCAATACATAGGAAGTATCCT-GTGCGGCTGGGTGAAG 1505 | | ||||| ||| |||| | || | ||||| || || ||||| | Sbjct 2063130 TCCAGGTGAATCGGTACGACCCCGTCTTGGCAGCGAACATCCTAGTTCG-CTGGGCCCGG 2063188 Query 1506 AGAGAGTTCAACAAAAGAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACC 1565 | ||||||||||| | |||||||| ||| ||||| ||||||| |||||| | ||||| Sbjct 2063189 TGGGAGTTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACA 2063248 Query 1566 AACATTGCAGAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAAT 1625 | ||| | || ||||| |||| |||||| || || |||||||||| |||||||||||| Sbjct 2063249 AGCATCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAAT 2063308 Query 1626 GAGAACTTTCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAA 1685 |||||||| ||||| ||||| || || ||||| ||| |||||||||||||||| ||||| Sbjct 2063309 GAGAACTTGCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAG 2063368 Query 1686 ATGACTAATAAGGTTGTTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGT-CCGGGT 1744 ||||||| ||| |||| || ||||| ||||| |||||||| |||| ||||| | |||| Sbjct 2063369 ATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGT 2063428 Query 1745 AGACCAGAAATGTAAAGGATCTGTTTGTATTGAACCTACTCCTGTAATTATTACTAGTAA 1804 || || ||||||||||| || || |||||||| || |||||| ||||||| ||||| Sbjct 2063429 TGATCAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAA 2063488 Query 1805 TACTGATATGTGTATGATTGTTGATGGCAACTCTACTACAATGGAACATAGAATACCATT 1864 ||| ||| |||| | |||||||| ||| ||||| ||||||||| ||| || Sbjct 2063489 TACATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTT 2063548 Query 1865 AGAGGAGCGTATGTTTCAAATTGTCCTATCACA--TAAATTGGAGCCTTCTTTTGGAAAA 1922 ||||| | ||||| | || | ||||| ||| | || | |||||| ||| Sbjct 2063549 GGAGGAAAGAATGTTCC--TTTTTAGGTTCACAGTAAAACTCAGGCATGATTTTGGGAAA 2063606 Query 1923 ATTTCTAAAAAAGAAGTCAGAGAATTTTTCAAATGGGCCAATGACAAT 1970 || |||| || || |||||||||||| | |||| | |||||||| Sbjct 2063607 ATAAGTAAATGGGAGGTAAGAGAATTTTTCCAGTGGGGCCATGACAAT 2063654 >seq3329 Length=551948 Score = 80.6 bits (88), Expect = 9e-12 Identities = 98/131 (75%), Gaps = 7/131 (5%) Strand=Plus/Plus Query 1602 TATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGATAAAATG 1661 |||| |||||||| ||||| ||||| |||||||| || |||||| ||| ||||||| Sbjct 431701 TATGTTTGTGTTAAATGGACCAATGAAAACTTTCCATTCAATGATGATGTCGATAAAAAT 431760 Query 1662 CTGATTTGGTGGGAGGAGGGAAAA---ATGACTAATAAGGTTGTTGAATCTGCAAAAGCA 1718 | |||||||||||| | |||| ||||| || | | |||| ||||||||||| Sbjct 431761 -TAATTTGGTGGGAGAAAAAAAAATTCATGACAAAAA---TAACTGAAACTGCAAAAGCA 431816 Query 1719 ATTTTGGGAGG 1729 || | ||||| Sbjct 431817 GTTCTAGGAGG 431827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16225287421640