Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq9666 165 2e-37 >seq9666 Length=8596230 Score = 165 bits (182), Expect = 2e-37 Identities = 348/515 (68%), Gaps = 3/515 (1%) Strand=Plus/Plus Query 1142 CCTGACAAAGACGGCTCCGGACTACCTGGTGGGCA-GCAACCCGCCGGAGGACATTACCA 1200 |||||| ||| |||| ||||||||| | |||| || || | ||| ||||| |||| Sbjct 2063050 CCTGACGAAGTCGGCCGAAGACTACCTGCTAGGCAAGCTTCCAGTCGG-GGACACCACCA 2063108 Query 1201 AAAATCGGATCTACCAAATCCTGGAGCTGAACGGGTACGATCCGCAGTACGCGGCCTCCG 1260 | || | | | |||| | || |||| ||||||| || | || || | Sbjct 2063109 AGAACAAGGTGTTCCAACGTTTCCAGGTGAATCGGTACGACCCCGTCTTGGCAGCGAACA 2063168 Query 1261 TCTTCCTGGGCTGGGCGCAAAAGAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGC 1320 || | | ||||||| | | ||||| ||| | ||| |||||||| ||| | | Sbjct 2063169 TCCTAGTTCGCTGGGCCCGGTGGGAGTTCAACAAGGGCAACGCCATCTGGTTCTACAGAC 2063228 Query 1321 CGGCCACGACGGGTAAAACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACG 1380 | || || || | || || | ||||| ||| || ||||||| || ||||| || || | Sbjct 2063229 CTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATG 2063288 Query 1381 GCTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGA 1440 |||| | ||||||||| ||||||||||| || ||||| || || || || |||||||||| Sbjct 2063289 GCTGTGGAAACTGGACTAATGAGAACTTGCCTTTCAATGACTGGGTAGATAAGATGGTGA 2063348 Query 1441 TCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGG 1500 | ||||||||||| || |||||||| || | || ||| || || |||||| ||| Sbjct 2063349 TTTGGTGGGAGGAAGGAAAGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGG 2063408 Query 1501 GCGGAAGCAAGGTGC-GCGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACT 1559 | || |||| | || || ||||| || || || | || || ||||| || Sbjct 2063409 GTGGGTTGGCTGTGCGGGGTTGATCAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACG 2063468 Query 1560 CCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACC 1619 || || | | ||| || || | | ||| || ||| |||| ||||||||||| ||| Sbjct 2063469 CCTGTACTTATTACCAGTAATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACC 2063528 Query 1620 TTCGAGCATCAGCAGCCGCTGCAGGACCGGATGTT 1654 || || ||| || || || |||| | ||||| Sbjct 2063529 TTGGAACATAAGGGACCTTTGGAGGAAAGAATGTT 2063563 Score = 158 bits (174), Expect = 4e-35 Identities = 245/344 (71%), Gaps = 17/344 (5%) Strand=Plus/Plus Query 2878 TCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGCGACAGAGTCATCACCACCAG- 2936 ||||||||||| |||||| | ||||| |||||| || | || ||||||| | Sbjct 2064865 TCCTCAGGAAACTGGCAT-GTGATTCTCAATGGGAAGGGAATC---TCGTCACCACTCGT 2064920 Query 2937 --CACCAGAACCTGGGCCCTGCCCACTTACAACAACCATCTCTACAAGCAAATCTCCAGC 2994 ||||||||| |||| || ||| | | ||||| ||||||||||||| || | || Sbjct 2064921 TCCACCAGAACTTGGGTGCTCCCCTCCGATGACAACAATCTCTACAAGCAGAT-TAAAGG 2064979 Query 2995 CAATCAGGAGCTTCAAACGACAACCACTACTTTGGCTACAGCACCCCTTGGGGGTATTTT 3054 | || || || ||||| |||||| ||||||||||||||| ||| || | Sbjct 2064980 CGAT-----GCCTC---CGACATGTCCTACTTGGGCTACAGCACCCCT-GGGCCTACCTC 2065030 Query 3055 GACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATTAACAAC 3114 ||||| ||||||||||| ||||||| || || ||||| ||||| ||||| |||||| Sbjct 2065031 GACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAAC 2065090 Query 3115 AACTGGGGATTCCGGCCCAAGAAACTCAGCTTCAAGCTCTTCAACATCCAAGTTAGAGGG 3174 ||||||| |||| || ||| || |||| | |||||||| ||||||| | | Sbjct 2065091 TACTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAG 2065150 Query 3175 GTCACGCAGAACGATGGCACGACGACTATTGCCAATAACCTTAC 3218 |||| | || | ||||| | ||| |||||||||||||| || Sbjct 2065151 GTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 2065194 Score = 143 bits (158), Expect = 8e-31 Identities = 192/265 (72%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 4051 CAAGGACCTATCTGGGCAAAGATTCCTCACACGGATGGACACTTTCATCCTTCTCCTCTG 4110 || || ||||| |||||||| |||||| |||| ||||| | ||||| ||| |||| Sbjct 2065996 CAGGGCCCTATTTGGGCAAAAATTCCTGACACTGATGGCAATTTTCAGCCTCGTCCTAAC 2066055 Query 4111 ATGGGAGGCTTTGGACTGAAACATCCGCCTCCTCAAATCATGATCAAAAATACTCCGGTA 4170 |||||| ||||||| |||||||| |||| || || ||||||||||| || Sbjct 2066056 ATGGGAAGCTTTGGGTGCAAACATCCATCTCCGATGATTCTGCAGAAAAATACTCCAGTC 2066115 Query 4171 CCGGCAAATCCTCCGACGACTTTCA--GCCCGGCCAAGTTTGCTTCATTTATCACTCAGT 4228 || ||| | ||||| || | |||| | ||| | | | || ||||| | ||||| Sbjct 2066116 CCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTATTAAG--TCTTTTATTAGTCAGT 2066173 Query 4229 ACTCCACTGGACAGGTCAGCGTGGAAATTGAGTGGGAGCTACAGAAAGAAAACAGCAAAC 4288 | |||||||| ||||| | ||||||||||| ||||||| | | |||| |||||||| Sbjct 2066174 ATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAATCAGAATCCAGCAAAC 2066233 Query 4289 GTTGGAATCCAGAGATTCAGTACAC 4313 | ||||||||| |||| || | ||| Sbjct 2066234 GCTGGAATCCAAAGATCCAATTCAC 2066258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15009430742440