Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq9666 147 7e-32 >seq9666 Length=8596230 Score = 147 bits (162), Expect = 7e-32 Identities = 283/407 (70%), Gaps = 23/407 (6%) Strand=Plus/Plus Query 2970 CACCAGAACCTGGGTCTTGCCCACCTACAACAACCACCTCTACAAGC-GACTCGGAGAGA 3028 ||||||||| ||||| | ||| || | ||||| | |||||||||| || | | || Sbjct 2064923 CACCAGAACTTGGGTGCTCCCCTCCGATGACAACAATCTCTACAAGCAGATTAAAGGCGA 2064982 Query 3029 GCCTGCAGTCCAACA---CCTACAACGGATTCTCCACCCCCTGGGGATACTTTGACTTCA 3085 ||| ||| ||| ||||| || | | |||||| |||| ||| | ||||||| Sbjct 2064983 ---TGCC-TCCGACATGTCCTACTTGGGCTACAGCACCCC-TGGGCCTACCTCGACTTCA 2065037 Query 3086 ACCGCTTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGG 3145 || | ||||| ||||||| || || ||||| ||||| |||||||||||| |||||| Sbjct 2065038 ACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGGG 2065097 Query 3146 GCATGCGACCCAAAGCCATG-CGGGTCAAAATCTTCAACATCCAGGTCAAGGAGGTCACG 3204 |||| ||| |||||| | || | ||||||| |||||||| || || |||||||||| | Sbjct 2065098 GCATCCGA-CCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATG 2065156 Query 3205 ACGTCGAACGGC---GAGACAACGGTGGCTAATAACCTTACCAGCACGGTTCAGATCTTT 3261 | | ||| |||||| | || |||||||| || || | ||||| ||| Sbjct 2065157 GAGGCAGCAGGCACAAAGACAA---TTGCCAATAACCTAACGTCAACCATCCAGATTTTT 2065213 Query 3262 GCGGACTCGTCGTACGAACTGCCGTACGTGATGG---ATGCGGGTCAAGAGGGCAGCCTG 3318 || || | ||| | ||||| || ||||| | |||| | ||||| || || Sbjct 2065214 GCAGATGACACATACCAGCTGCCCTATGTGATTGGAAATGCCACT---GAGGGGTGCTTG 2065270 Query 3319 CCTCCTTTTCCCAACGACGTCTTTATGGTGCCCCAGTACGGCTACTG 3365 || |||||||| || || |||||| |||| |||||| | ||||| Sbjct 2065271 CCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGTACTG 2065317 Score = 136 bits (150), Expect = 1e-28 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1339 AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACA 1398 ||||| ||| | ||| |||||||| ||| | || || || || | || || | || Sbjct 2063193 AGTTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCA 2063252 Query 1399 TCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGA 1458 ||| ||| || ||||||| || ||||| || || ||||| | |||||||| ||||||| Sbjct 2063253 TCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGA 2063312 Query 1459 ACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1518 |||| || ||||| || || || || ||||||||||| ||||||||||| || ||||||| Sbjct 2063313 ACTTGCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGA 2063372 Query 1519 CGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGG 1558 | || | |||||| || || ||||| |||| || Sbjct 2063373 CTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGG 2063412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15140615278880