Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq9666 181 3e-42 >seq9666 Length=8596230 Score = 181 bits (200), Expect = 3e-42 Identities = 273/387 (71%), Gaps = 1/387 (0%) Strand=Plus/Plus Query 1287 GCTGGGCCCAGAAAAGGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCGGCCACCA 1346 ||||||||| | |||| ||| ||||| |||||||| | | | || || |||| Sbjct 2063178 GCTGGGCCCGGTGGGAGTTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCA 2063237 Query 1347 CGGGCAAGACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCA 1406 | ||||||| | ||||| ||| || ||||||| || ||||| || || ||||| | | Sbjct 2063238 CCAGCAAGACAAGCATCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAA 2063297 Query 1407 ACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGG 1466 ||||||| ||||||||||| || |||||||| || || || ||||||||||| ||||||| Sbjct 2063298 ACTGGACTAATGAGAACTTGCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGG 2063357 Query 1467 AGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCA 1526 |||| || |||||||| || | || ||||| || || |||||| | || || Sbjct 2063358 AGGAAGGAAAGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGG 2063417 Query 1527 AGGTGC-GCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATC 1585 |||| | || || ||||| || || |||| || || || || || || || | Sbjct 2063418 CTGTGCGGGGTTGATCAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTT 2063477 Query 1586 GTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCAC 1645 | ||| || || | | ||| || ||| |||| ||||||||||| ||||| || || Sbjct 2063478 ATTACCAGTAATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACAT 2063537 Query 1646 CAGCAGCCGTTGCAGGACCGGATGTTC 1672 || || ||| |||| | |||||| Sbjct 2063538 AAGGGACCTTTGGAGGAAAGAATGTTC 2063564 Score = 114 bits (126), Expect = 4e-22 Identities = 121/158 (77%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 3038 CTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGATTTCAACAGATTCCACTGCCACTT 3097 |||||| |||||||||||||| |||| || | || |||||||||||||| ||||||| Sbjct 2064998 CTACTTGGGCTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTG 2065056 Query 3098 TTCACCACGTGACTGGCAGCGACTCATCAACAACAATTGGGGATTCCGGCCCAAGAGACT 3157 || || ||||| ||||| |||||||||||| | ||||| |||| || ||| Sbjct 2065057 GAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCGACCAAAGGCTTG 2065116 Query 3158 CAACTTCAAACTCTTCAACATCCAAGTCAAGGAGGTCA 3195 | ||||| | |||||||| ||||| |||||||||| Sbjct 2065117 TAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCA 2065154 Score = 96.9 bits (106), Expect = 1e-16 Identities = 181/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 4047 GATAGAGACGTGTACCTGCAGGGTCCCATTTGGGCCAAAATTCCTCACACAGATGGACAC 4106 |||| |||| | || | ||||| || |||||||| ||||||||| |||| ||||| | Sbjct 2065978 GATAAAGACATCTATCACCAGGGCCCTATTTGGGCAAAAATTCCTGACACTGATGGCAAT 2066037 Query 4107 TTTCACCCGTCTCCTCTTATGGGCGGCTTTGGACTCAAGAACCCGCCTCCTCAGATCCTC 4166 ||||| || |||| ||||| ||||||| ||| | || |||| ||| || Sbjct 2066038 TTTCAGCCTCGTCCTAACATGGGAAGCTTTGGGTGCAAACATCCATCTCCGATGATTCTG 2066097 Query 4167 ATCAAAAACACGCCTGTTCCTGCGAATCCTCCGGCGGAGTTTTCAGCTACAAAGTTTGCT 4226 ||||| || || || ||||| | ||||| |||| || | | || || Sbjct 2066098 CAGAAAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTATTAAG 2066157 Query 4227 TCATTCATCACCCAATACTCCACAGGACAAGTGAGTGTGGAAATTGAATGGGAGCTGCAG 4286 || || || | || || ||||| || || || | ||||||||||| ||||||| | Sbjct 2066158 TCTTTTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAA 2066217 Query 4287 AAAGAAAACAGCAAGCGCTGGAATCC 4312 |||| |||||| ||||||||||| Sbjct 2066218 TCAGAATCCAGCAAACGCTGGAATCC 2066243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14983833759720