Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq9666 214 5e-52 >seq9666 Length=8596230 Score = 214 bits (236), Expect = 5e-52 Identities = 456/677 (67%), Gaps = 27/677 (4%) Strand=Plus/Plus Query 907 TACATGGAGCTCGTGGATTGGCTCGTGGAGAAGGGGATCACCACCGAGAAGGAATGGCTG 966 |||| ||| | ||||| ||||| || || || || || || | |||| |||||||| Sbjct 2062911 TACAGCGAGGTTGTGGACTGGCTAGTCGAAAACGGAATAACTTCTGAGAGACAATGGCTG 2062970 Query 967 CTGGAAAACAGAGAAAGCTTTCGGAGCTTTCAGGCCTCGAGCAACTCGGCGCGTCAGATC 1026 |||||| ||| |||| |||||| |||||||| | ||| || ||| | Sbjct 2062971 CTGGAAGACAAAGAATCCTTTCGCAGCTTTCA-------AACAA------GC-TCAA--C 2063014 Query 1027 AAGACGGCCCTGCA--AGGCGCCATTCAGGAGATGCTTCTGACCAAGACGGCGGAGGACT 1084 | | | || ||| | | |||| | | || ||||| ||||| ||| |||| || |||| Sbjct 2063015 AGGGCAGCACTGGAGAACGCGCAAGCC--GAAATGCTCCTGACGAAGTCGGCCGAAGACT 2063072 Query 1085 ACCTCGTCGGAAAGGATCCCGTCTCGGACGACGACATCCGTCAGAACCGCATCTACAAGA 1144 |||| | || ||| ||| ||| |||| | || ||||| | | | | Sbjct 2063073 ACCTGCTAGGCAAGCTTCCAGTCGGGGACACCACCA------AGAACAAGGTGTTCCAAC 2063126 Query 1145 TTCTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGTATTTTGGTCGGGTGGTGCC 1204 | | | |||| | |||||||| | | | | || || | || | ||| || Sbjct 2063127 GTTTCCAGGTGAATCGGTACGACCCCGTCTTGGCAGCGAACATCCTAGTTCGCTGGGCCC 2063186 Query 1205 AGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACCGGCAAGA 1264 | | | | |||| | ||| | | ||| | | | ||| |||||||||| |||||| Sbjct 2063187 GGTGGGAGTTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGA 2063246 Query 1265 CCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCA 1324 | | ||||| ||||||||| |||| ||||||||| || ||||| || | |||||||| | Sbjct 2063247 CAAGCATCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTA 2063306 Query 1325 ACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGGAGGGCA 1384 | |||||||| || ||||| ||||| || || || ||| | || ||||||||||| || | Sbjct 2063307 ATGAGAACTTGCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAA 2063366 Query 1385 AAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGGGTG-AGA 1443 | ||||| ||| | || || | || || || ||| |||| || | ||| | Sbjct 2063367 AGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGG 2063426 Query 1444 GTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGT 1503 || || |||||||| |||| ||| || | || ||||| ||||| || ||||||||||| Sbjct 2063427 GTTGATCAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGT 2063486 Query 1504 AACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGAGCATAAGCAGCCG 1563 || || | | |||| ||| | || ||||||| || || || || |||||| || Sbjct 2063487 AATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCT 2063546 Query 1564 TTGGAGGACAGGATGTT 1580 |||||||| || ||||| Sbjct 2063547 TTGGAGGAAAGAATGTT 2063563 Score = 105 bits (116), Expect = 2e-19 Identities = 219/322 (68%), Gaps = 3/322 (1%) Strand=Plus/Plus Query 3083 CTTTGGATTCAGCACCCCCTGGGGATACTTTGACTACAATCGATTCCACTGCCACTTTTC 3142 ||| || | ||||||||| |||| ||| | |||| ||| ||||||| ||||||| Sbjct 2065001 CTTGGGCTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAG 2065059 Query 3143 CCCGCGAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGTCCCAAAGCGATGCG 3202 || |||||||| || || |||||||||||| ||||||||||||| || || || | Sbjct 2065060 TCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCGACCAAAGGCTTGTAG 2065119 Query 3203 CTTTAGACTCTTTAACATCCAGGTTAAAGAGGTCACGGTCCAAGACTTCAACACCACCAT 3262 | | | | || ||||| || ||||| ||||||| || || || | || || Sbjct 2065120 AATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGACAAT 2065179 Query 3263 CGGCAACAACCTCACCAGTACGGTCCAGGTCTTTGCGGACAAGGACTACCAACTGCCGTA 3322 | ||| ||||| || || ||||| | ||||| || | ||||| ||||| || Sbjct 2065180 TGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCCTA 2065239 Query 3323 CGTCCTCGGATCGGCTACCGAAGGCACCTT-CCCGCCGTTCCCAGCGGATATCTACACGA 3381 || | ||| || || || || ||| ||||| ||||| | ||| | | | | Sbjct 2065240 TGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCC-GGTGATGTTTTTATGT 2065298 Query 3382 TCCCGCAGTACGGGTACTGCAC 3403 | || |||||| |||||||||| Sbjct 2065299 TGCCTCAGTACTGGTACTGCAC 2065320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14907042811560