Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq9666 170 6e-39 >seq9666 Length=8596230 Score = 170 bits (188), Expect = 6e-39 Identities = 253/364 (70%), Gaps = 1/364 (0%) Strand=Plus/Plus Query 1331 AAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAA 1390 ||| | ||| || ||||| | || |||| ||||||||| | ||||| | ||||| ||| Sbjct 2063201 AAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAG 2063260 Query 1391 GCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNN 1450 || ||| | | | ||||| ||||||||||||| |||||||||||||||||||| Sbjct 2063261 GCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCCT 2063320 Query 1451 NNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAG 1510 || || ||| |||| ||||||||||| ||||||||||| || || Sbjct 2063321 TTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAA 2063380 Query 1511 GTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTACGAG-TGGATCAAAAATG 1569 | || || | || || ||||| ||||| |||| || || | | ||||||||||| Sbjct 2063381 ATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGATCAAAAATG 2063440 Query 1570 TAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTG 1629 |||| || || ||| | || | || || || |||| ||| ||||| | | ||| Sbjct 2063441 TAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGTG 2063500 Query 1630 TGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCAT 1689 || ||||| ||||||||| ||| ||||| ||||| || || |||| || | || Sbjct 2063501 TGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAGGAAAGAAT 2063560 Query 1690 GTTC 1693 |||| Sbjct 2063561 GTTC 2063564 Score = 134 bits (148), Expect = 4e-28 Identities = 220/308 (71%), Gaps = 8/308 (3%) Strand=Plus/Plus Query 3025 CCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGACTGGCA 3084 |||||||| ||| | ||||| ||| | ||||| ||||||| || ||||||| || Sbjct 2065015 CCCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCA 2065074 Query 3085 AAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCA-AGTCCGCATCTTCA 3143 |||||||||||||| ||||||| | || ||||| || || | | || || |||| Sbjct 2065075 GCGGCTCATCAACAACTACTGGGGCATCCG-ACCAAAGGCTTGTAGAATCAAAATTTTCA 2065133 Query 3144 ACATCCAAGTTAAGGAGGTCACGACGTCTAACGGGGA-GACGACCGTATCCAACAACCTC 3202 |||| |||||||||||||||| | | | | | || | | ||| | |||| ||||| Sbjct 2065134 ACATACAAGTTAAGGAGGTCATGGAGGC-AGCAGGCACAAAGACAATTGCCAATAACCTA 2065192 Query 3203 ACCAGCACGGTCCAGATCTTTGCGGACAGCACGTACGAGCTCCCGTACGTGA-TGGATGC 3261 || || ||||||| ||||| || ||| ||| |||| || || |||| |||| Sbjct 2065193 ACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCCTATGTGATTGGA--A 2065250 Query 3262 AGGTCA-GGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCCTCAGTACG 3320 | | || ||||| ||||||| |||| ||| || || || ||| ||||||||||| Sbjct 2065251 ATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACT 2065310 Query 3321 GGTACTGC 3328 |||||||| Sbjct 2065311 GGTACTGC 2065318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14903843188720