Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq9666 291 3e-75 >seq9666 Length=8596230 Score = 291 bits (322), Expect = 3e-75 Identities = 293/376 (78%), Gaps = 5/376 (1%) Strand=Plus/Plus Query 1520 GAATTCAACAAAAGAAATGCCATATGGCTCTACGGACCTGCGACCACCGGAAAGACCAAC 1579 || |||||||| | || ||||| ||| ||||| |||||||||||||| | ||||| | | Sbjct 2063192 GAGTTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGC 2063251 Query 1580 ATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAG 1639 || | |||||||| |||| |||||| || || |||||||||| ||||||||||||||| Sbjct 2063252 ATCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAG 2063311 Query 1640 AACTTCCCATTTAATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAAATG 1699 ||||| || || |||||||| || ||||| ||| | || ||||||||||| ||||| ||| Sbjct 2063312 AACTTGCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATG 2063371 Query 1700 ACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTgggggggTCTGCTGTAC-GAGTTGA 1758 || | |||| | || || || || ||||| || |||| |||| ||||| | | ||||| Sbjct 2063372 ACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGA 2063431 Query 1759 TCAAAAGTGTAAGGGGTCTGTTTGTATTGAACCTACTCCTGTAATAATTACCAGTAATAC 1818 |||||| ||||| || || || |||||||| || |||||| | |||||||||||||| Sbjct 2063432 TCAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATAC 2063491 Query 1819 TGATA--TGTGCATGATTGTGGATGGAAATTCTACTACAATGGAACACAGAATTCCTTTG 1876 ||| ||||| || | || ||||| || ||||| ||||||| | |||||| Sbjct 2063492 ATATAAGTGTGC-TG-TGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTG 2063549 Query 1877 GAGGAAAGAATGTTCC 1892 |||||||||||||||| Sbjct 2063550 GAGGAAAGAATGTTCC 2063565 Score = 179 bits (198), Expect = 1e-41 Identities = 298/423 (70%), Gaps = 12/423 (3%) Strand=Plus/Plus Query 3257 GGATACAGCACCCCCTGGGGGTACTTTGATTTCAACAGATTCCACTGCCATTTCTCTCCA 3316 || ||||||||||| |||| ||| | || |||||||||||||| ||||| | ||| Sbjct 2065005 GGCTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCC 2065063 Query 3317 AGAGACTGGCAGAGACTCATCAACAACCATTGGGGGATTAGACCGAAAGCACTCAAATTC 3376 ||||||| ||| | |||||||||||| | ||||| || |||| || || | | || Sbjct 2065064 CGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCGACCAAAGGCTTGTAGAATC 2065123 Query 3377 AAGATATTCAATGTGCAAGTTAAAGAAGTCACGACGCAAGACCAG--ACAAAGACTATTG 3434 || || ||||| | |||||||| || |||| | | || ||| |||||||| |||| Sbjct 2065124 AAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAG--CAGGCACAAAGACAATTG 2065181 Query 3435 CTAACAACCTTACCTCTACAATCCAGATATTCACGGATAATGAACACCAGCTGCCCTATG 3494 | || ||||| || || || |||||||| || | ||| | | ||||||||||||||| Sbjct 2065182 CCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCCTATG 2065241 Query 3495 TTCTGGGCTCGGCCACGGAGGGGACGATGCCACCGTTCCCCTCAGATGTGTATGCCTTGC 3554 | | || ||||| |||||| |||| | || ||| ||||| | | |||| Sbjct 2065242 TGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGC 2065301 Query 3555 CCCAGTACGGCTACTGCACAATGCACACCA--ACCAGAGTGGAGCGAGATTC---AATGA 3609 | |||||| | |||||||| |||| || | | ||||| ||| | | || | | | Sbjct 2065302 CTCAGTACTGGTACTGCACCGTGCATACGAAGAGCAGAG-GGAAC-ACATCCCCTACTCC 2065359 Query 3610 CAGAAGTGCCTTCTATTGCTTAGAGTACTTCCCCAGTCAGATGCTGAGAACAGGGAATAA 3669 | || || |||||| |||| ||||| ||||||||||||| | || || ||||| Sbjct 2065360 ACGCTCAGCTTTTTATTGCCTAGAATACTTTTCCAGTCAGATGCTTTGCACCGGCAATAA 2065419 Query 3670 TTT 3672 ||| Sbjct 2065420 TTT 2065422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16308477615480