Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq9666 120 9e-24 >seq9666 Length=8596230 Score = 120 bits (132), Expect = 9e-24 Identities = 198/284 (70%), Gaps = 5/284 (2%) Strand=Plus/Plus Query 3795 CAGGTATGGTGTGGTCTAATAGAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTC 3854 |||||||| | ||| ||| |||||| || ||||| ||||||||||| ||||||| Sbjct 2065966 CAGGTATG-TATGG----ATAAAGACATCTATCACCAGGGCCCTATTTGGGCAAAAATTC 2066020 Query 3855 CAAATACAGATGGACATTTTCATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATC 3914 | | || ||||| ||||||| ||| ||| | ||||| | ||||| | ||||||| Sbjct 2066021 CTGACACTGATGGCAATTTTCAGCCTCGTCCTAACATGGGAAGCTTTGGGTGCAAACATC 2066080 Query 3915 CTCCGCCTATGATTCTGATCAAAAATACACCAGTTCCTGCTGATCCTCCAACTACCTTCA 3974 | | || ||||||||| |||||||| ||||| ||||| || ||||| | |||||| Sbjct 2066081 CATCTCCGATGATTCTGCAGAAAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCA 2066140 Query 3975 ATCCAATGCCACAGACTAGTTTCATTACTGAATACAGTACAGGACAAGTAACTGTTGAAA 4034 | || ||| | ||| |||| | | || || || || ||||| || |||| Sbjct 2066141 CTGAAACGCCTATTAAGTCTTTTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAA 2066200 Query 4035 TGTTGTGGGAGGTACAGAAAGAATCCTCCAAAAGATGGAATCCA 4078 | |||||| | | ||||||| |||| | ||||||||| Sbjct 2066201 TTGATTGGGAGCGAAAATCAGAATCCAGCAAACGCTGGAATCCA 2066244 Score = 104 bits (114), Expect = 7e-19 Identities = 309/465 (66%), Gaps = 25/465 (5%) Strand=Plus/Plus Query 2663 TCCTCAGGTGATTGGCATTGCGATAC-CAAGTGGATGGGAGACCACGTCATTACAAAGTC 2721 |||||||| | |||||| | ||| | ||| ||| |||| | | ||||| || || Sbjct 2064865 TCCTCAGGAAACTGGCAT-GTGATTCTCAATGGGAAGGGA-ATCTCGTCACCACTCGTTC 2064922 Query 2722 AACCAGAACTTGGGTGCTCCCCACTTACGGGAATCATCTCTACGGGCCTATCAACTTTGA 2781 ||||||||||||||||||||| | | | || |||||||| || || || || Sbjct 2064923 CACCAGAACTTGGGTGCTCCCCTCCGATGACAACAATCTCTACAAGCAGATTAAAGGCGA 2064982 Query 2782 CGGCACC-ACAGGTTCGGGTGCTAATGCAGCCTATGCAGGATACAAGACTCCCTGGGGGT 2840 | | || ||| || | || | || || |||| || ||||||| | Sbjct 2064983 TGCCTCCGACATGTCC------TACT--------TG--GGCTACAGCAC-CCCTGGGCCT 2065025 Query 2841 ACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGACTGGCAAAGACTCATCA 2900 || | |||||||| ||||||| ||||||| ||||||||||| || | ||||||| Sbjct 2065026 ACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCA 2065085 Query 2901 ACAACCACACAGGCATCAGGCCGAAAGGACT-CAAAATCAAAGTCTTTAACGTCCAAGTC 2959 ||||| || |||||| | || ||||| | | ||||||| | || ||| | ||||| Sbjct 2065086 ACAACTACTGGGGCATCCGACC-AAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTT 2065144 Query 2960 AAAGAAGTTA-CAACACAAGATTCAACGAAAACAATTGCCAACAATCTCACCAGCACCGT 3018 || || || | | || | | || || ||||||||||| || || || ||| | Sbjct 2065145 AAGGAGGTCATGGAGGCAGCAGGC-ACAAAGACAATTGCCAATAACCTAACGTCAACCAT 2065203 Query 3019 ACAGATCTTTGCGGACGAGAACTACGACTTACCATATGTATTAGGCAGTGCTACACAAGG 3078 ||||| ||||| || || | ||| | | || ||||| | || | ||| || | || Sbjct 2065204 CCAGATTTTTGCAGATGACACATACCAGCTGCCCTATGTGATTGGAAATGCCACTGAGGG 2065263 Query 3079 CACATTTCCTCCATTTCCCAATGATGTATTTATGTTACCACAATA 3123 || || | |||||| |||||| |||||||| || || || Sbjct 2065264 GTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTA 2065308 Score = 95.1 bits (104), Expect = 3e-16 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 1280 CAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACCATCATCGCTCA 1339 |||| | ||| |||||||| | || | || || || ||| |||| || | ||||| | Sbjct 2063200 CAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 2063259 Query 1340 AGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAATGAAAACTTTCC 1399 ||||| || | |||||| | | | || ||| || ||||||||||| ||||| || Sbjct 2063260 GGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCC 2063319 Query 1400 CTTCTGTAACTGTCCAGGGAAACTGCTTATCTGGTGGGAGGAGGGCAAGATGACAAACAA 1459 ||| | |||| || || || | || ||||||||||| || |||||||| | || Sbjct 2063320 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAA 2063379 Query 1460 AATGGTGGAGACGGCTAAATGTATACTGGGGGGATCTGCTGT 1501 ||| || ||| | |||||| || |||| || | ||||| Sbjct 2063380 AATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGT 2063421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14068741627480