Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq9666 235 2e-58 >seq9666 Length=8596230 Score = 235 bits (260), Expect = 2e-58 Identities = 275/370 (74%), Gaps = 1/370 (0%) Strand=Plus/Plus Query 1316 TTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATC 1375 ||||||||| | ||| || ||||| ||||| |||| || || ||| ||||||| | |||| Sbjct 2063195 TTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATC 2063254 Query 1376 GCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAAC 1435 | |||||| ||||||| ||||||| ||||| ||||| | |||||||| ||||| ||| Sbjct 2063255 GTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAAC 2063314 Query 1436 TTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACC 1495 || || || |||||||| || || || ||| | |||||||||||||| ||||||||||| Sbjct 2063315 TTGCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACT 2063374 Query 1496 AACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGC-GGGTCGATCA 1554 | || | || || || || || ||||| |||| || | |||| |||| ||||| Sbjct 2063375 AGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGATCA 2063434 Query 1555 GAAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAA 1614 ||||||||| || || |||||||| | || ||||| || | || |||||| | Sbjct 2063435 AAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATA 2063494 Query 1615 CATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGA 1674 | ||||| ||||| |||||||| ||| ||||| ||||| || || ||||||| Sbjct 2063495 TAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAGGA 2063554 Query 1675 CCGCATGTTC 1684 | |||||| Sbjct 2063555 AAGAATGTTC 2063564 Score = 197 bits (218), Expect = 4e-47 Identities = 366/530 (69%), Gaps = 19/530 (4%) Strand=Plus/Plus Query 2991 CCTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCACT 3050 ||||||| || ||||||||||| |||| ||| | ||||| ||| | ||||| |||||| Sbjct 2064997 CCTACTTGGGCTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACT 2065055 Query 3051 GGAGCCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTCCC 3110 |||| ||||||||||| || | ||||||||||||||||||||| || |||| | | Sbjct 2065056 GGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCGACCAAAGGCTT 2065115 Query 3111 TCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCACGG-TGCAGGACTCCACCACN 3169 ||| ||||||| |||||||| ||||| || ||||||| || |||| | ||| | Sbjct 2065116 GTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCA-GGCACAAAG 2065174 Query 3170 NNNATCGCCAACAACCTCACCTCCACCGTCCAAGTGTTTACGGACGACGACTACCAGCTG 3229 || ||||| ||||| || || ||| |||| | ||| | || ||| ||||||||| Sbjct 2065175 ACAATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTG 2065234 Query 3230 CCCTACGTCGTCGGCAACGGGACCGAGGGATGCCTGCCGGCCTTCCCTCCGCAGGTCTTT 3289 ||||| || | || || | || ||||| ||| |||| || || || | || ||| Sbjct 2065235 CCCTATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTT 2065294 Query 3290 ACGCTGCCGCAGTACGGTTAC-GC--------GACGCTGAACCGCGACAACACAGAAAAT 3340 | | |||| |||||| | ||| || ||| || | | | ||||| | Sbjct 2065295 ATGTTGCCTCAGTACTGGTACTGCACCGTGCATACGAAGAGCAGAGGGAACAC----ATC 2065350 Query 3341 CCCACCGAGAGGAGCAGCTTCTT-CTGCCTAGAGTACTTTCCCAGCAAGATGCTGAGAAC 3399 ||| | | | |||||| || |||||||| |||||| |||| ||||||| | || Sbjct 2065351 CCCTACTCCACGCTCAGCTTTTTATTGCCTAGAATACTTTTCCAGTCAGATGCTTTGCAC 2065410 Query 3400 GGGCAACAACTTTGAGTTTAC-CTACAACTTTGAGGAGGTGCCCTTCCACTCCAGCTTCG 3458 ||||| || ||| ||||| | || |||||| || | || || ||||| |||| | Sbjct 2065411 CGGCAATAA-TTTCAGTTTTCAATATGCCTTTGAAGACCTCCCTTTTCACTCTTGCTTTG 2065469 Query 3459 CTCCCAGTCAGAACCTGTTCAAGCTGGCCAACCCGCTGGTGGACCAGTAC 3508 | | | ||| | || | || ||||||| || || ||||||||| Sbjct 2065470 CGCATAATCAAAGAGTGACTCATCTCTCCAACCCCCTTGTCGACCAGTAC 2065519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14740662423880