Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq9666 181 3e-42 >seq9666 Length=8596230 Score = 181 bits (200), Expect = 3e-42 Identities = 273/387 (71%), Gaps = 1/387 (0%) Strand=Plus/Plus Query 1286 GCTGGGCCCAGAAAAAGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCA 1345 ||||||||| | ||||| ||| ||||| |||||||| | | | || || |||| Sbjct 2063178 GCTGGGCCCGGTGGGAGTTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCA 2063237 Query 1346 CCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCA 1405 || ||||||| | ||| | ||| || ||||||| || ||||| || || ||||| | | Sbjct 2063238 CCAGCAAGACAAGCATCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAA 2063297 Query 1406 ACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGG 1465 ||||||| ||||||||||| || ||||| || || || || ||||||||||| ||||||| Sbjct 2063298 ACTGGACTAATGAGAACTTGCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGG 2063357 Query 1466 AGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCA 1525 |||| || |||||||| || | || ||||| || || |||||| | || || Sbjct 2063358 AGGAAGGAAAGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGG 2063417 Query 1526 AGGTGC-GCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATC 1584 |||| | || || ||||| || || |||| || || || || || || || | Sbjct 2063418 CTGTGCGGGGTTGATCAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTT 2063477 Query 1585 GTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCAC 1644 | ||| || || | | ||| || ||| |||| ||||||||||| ||||| || || Sbjct 2063478 ATTACCAGTAATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACAT 2063537 Query 1645 CAGCAGCCGTTGCAGGACCGGATGTTC 1671 || || ||| |||| | |||||| Sbjct 2063538 AAGGGACCTTTGGAGGAAAGAATGTTC 2063564 Score = 132 bits (146), Expect = 1e-27 Identities = 278/409 (68%), Gaps = 19/409 (5%) Strand=Plus/Plus Query 2953 CACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCCAGTGA 3012 |||| |||| |||| || ||| || | ||||| | ||||||||||| || Sbjct 2064923 CACCAGAACTTGGGTGCTCCCCTCCGATGACAACAATCTCTACAAGCAGATT-------- 2064974 Query 3013 AACTGCAGGTAGTACCAACGACAACACCTACTTCGGCTACAGCACCCCCTGGGGGTATTT 3072 || ||| | || ||||| ||||||| |||||||||||||| |||| || | Sbjct 2064975 AA----AGGCGATGCCTCCGACATGTCCTACTTGGGCTACAGCACCCC-TGGGCCTACCT 2065029 Query 3073 TGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCAACAA 3132 ||||| ||||||||||| ||||||| || || ||||| ||||| ||||||||||| Sbjct 2065030 CGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAA 2065089 Query 3133 CAACTGGGGATTCCGGCCCAAGAAGCT--GCGGTTCAAGCTCTTCAACATCCAGGTCAAG 3190 | ||||||| |||| || ||| ||| | |||| | |||||||| || || ||| Sbjct 2065090 CTACTGGGGCATCCGACCAAAG--GCTTGTAGAATCAAAATTTTCAACATACAAGTTAAG 2065147 Query 3191 GAGGTCACGACGAATGACGGCGTTACGACCATCGCTAATAACCTTACCAGCACGATTCAG 3250 ||||||| | | | ||| | ||| || || |||||||| || || || ||| Sbjct 2065148 GAGGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAG 2065207 Query 3251 GTATTCTCGGACTCGGAATACCAGCTGCCGTACGTCCTCGGCTCTGCGCAC-CAGGGCTG 3309 | || | || |||||||||||| || || | || ||| ||| |||| || Sbjct 2065208 ATTTTTGCAGATGACACATACCAGCTGCCCTATGTGATTGGAAATGC-CACTGAGGGGTG 2065266 Query 3310 CCTGCCTCCGTTCCCGGCGGACGTCTTCATGATTCCTCAGTACGGCTAC 3358 | |||| | || || | || || || ||| | ||||||||| | ||| Sbjct 2065267 CTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGTAC 2065315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14993432628240