Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq9666 176 1e-40 >seq9666 Length=8596230 Score = 176 bits (194), Expect = 1e-40 Identities = 239/332 (72%), Gaps = 1/332 (0%) Strand=Plus/Plus Query 1212 GCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCA 1271 ||||| |||||||| | | |||| || |||||| ||||||| | ||| | ||| || | Sbjct 2063205 GCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTA 2063264 Query 1272 TCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCA 1331 |||||| || ||||| || || ||||| | |||||||| ||||||||||| || |||| Sbjct 2063265 TCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCCTTTCA 2063324 Query 1332 ATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCG 1391 |||| || || || ||||||||||| ||||||||||| || |||||||| || | | Sbjct 2063325 ATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAAATTG 2063384 Query 1392 TGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGC-GCGTGGACCAAAAGTGCAAG 1450 | ||||| || || |||||| | || || |||| | || || ||||| || || Sbjct 2063385 TAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGATCAAAAATGTAAA 2063444 Query 1451 TCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCC 1510 |||| || || || || || || || | | ||| || || | | ||| || Sbjct 2063445 GGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGTGTGCT 2063504 Query 1511 GTGATTGACGGGAACAGCACCACCTTCGAGCA 1542 ||| |||| ||||||||||| ||||| || || Sbjct 2063505 GTGGTTGATGGGAACAGCACTACCTTGGAACA 2063536 Score = 165 bits (182), Expect = 2e-37 Identities = 234/328 (71%), Gaps = 1/328 (0%) Strand=Plus/Plus Query 2933 CGACAACACCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCA 2992 ||||| ||||||| |||||||||||||| |||| || | ||||| ||||||||||| Sbjct 2064989 CGACATGTCCTACTTGGGCTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCA 2065047 Query 2993 CTGCCACTTTTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCC 3052 ||||||| || || ||||| ||||| |||||||||||| ||||||| |||| || Sbjct 2065048 GTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCGACC 2065107 Query 3053 CAAGAGACTCAGCTTCAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGCAGAATGAAGG 3112 ||| || |||| | |||||||| || || |||||||||| | || | ||| Sbjct 2065108 AAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGG 2065167 Query 3113 CACCAAGACCATCGCCAATAACCTCACCAGCACCATCCAGGTGTTTACGGACTCGGAGTA 3172 ||| ||||| || ||||||||||| || ||||||||| | ||| | || || Sbjct 2065168 CACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATA 2065227 Query 3173 CCAGCTGCCGTACGTTCTCGGCTCTGCCCACCAGGGCTGCCTGCCTCCGTTCCCGGCGGA 3232 ||||||||| || || | || |||| |||| ||| |||| | || || | || Sbjct 2065228 CCAGCTGCCCTATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGA 2065287 Query 3233 CGTGTTCATGATTCCCCAGTACGGCTAC 3260 || || ||| | || |||||| | ||| Sbjct 2065288 TGTTTTTATGTTGCCTCAGTACTGGTAC 2065315 Score = 89.7 bits (98), Expect = 1e-14 Identities = 180/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 3969 CAGGGTCCCATCTGGGCCAAGATTCCTCACACGGACGGCAACTTCCACCCGTCTCCGCTG 4028 ||||| || || ||||| || |||||| |||| || ||||| || || || ||| Sbjct 2065996 CAGGGCCCTATTTGGGCAAAAATTCCTGACACTGATGGCAATTTTCAGCCTCGTCCTAAC 2066055 Query 4029 ATGGGCGGCTTTGGCCTGAAACATCCTCCGCCTCAGATCCTGATCAAGAACACGCCTGTA 4088 ||||| ||||||| |||||||| | || ||| ||| || || || || || Sbjct 2066056 ATGGGAAGCTTTGGGTGCAAACATCCATCTCCGATGATTCTGCAGAAAAATACTCCAGTC 2066115 Query 4089 CCTGCGGATCCTCCGACCACCTTCAACCAGTCAAAGC---TGAACTCTTTCATCACGCAA 4145 ||||| || ||||| | |||||| | || || | || ||||| || | || Sbjct 2066116 CCTGCAGAACCTCCTGCGGCCTTCACTGA---AACGCCTATTAAGTCTTTTATTAGTCAG 2066172 Query 4146 TACAGCACCGGACAGGTCAGCGTGGAAATTGAATGGGAGCTGCAGAAGGAAAACAGCAAG 4205 || ||| || ||||| | ||||||||||| ||||||| | ||| |||||| Sbjct 2066173 TATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAATCAGAATCCAGCAAA 2066232 Query 4206 CGCTGGAACCCCGAGATCCAGTACAC 4231 |||||||| || ||||||| | ||| Sbjct 2066233 CGCTGGAATCCAAAGATCCAATTCAC 2066258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13943956336720