Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq9666 224 3e-55 >seq9666 Length=8596230 Score = 224 bits (248), Expect = 3e-55 Identities = 269/364 (74%), Gaps = 1/364 (0%) Strand=Plus/Plus Query 1218 CAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACCACCGGCAAGACCAACATCGCGGA 1277 |||| | ||| | | ||| | | | |||||||||||||| ||||||| | ||||| ||| Sbjct 2063200 CAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 2063259 Query 1278 GGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCC 1337 |||||| |||| ||||||||| || ||||| || | |||||||| || |||||||| || Sbjct 2063260 GGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCC 2063319 Query 1338 GTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGGGAAGAGGGCAAAATGACCGCCAA 1397 ||||| ||||| || || |||||| | || |||||||| || || || ||||| || Sbjct 2063320 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAA 2063379 Query 1398 GGTGGTGGAAACGGCTAAAGCGATTCTGGGAGGATCTCGGGTG-AGAGTGGACCAAAAAT 1456 | || || | |||||||| ||| |||| || | ||| | || || ||||||| Sbjct 2063380 AATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGATCAAAAAT 2063439 Query 1457 GCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGTAACACCAACATGT 1516 | |||| ||| || | || ||||| ||||| || ||||||||||||| || | | || Sbjct 2063440 GTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGT 2063499 Query 1517 GTTATGTCATCGACGGGAACACGACTACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGA 1576 || ||| | || ||||||| ||||| || || |||||| || |||||||| || | Sbjct 2063500 GTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAGGAAAGAA 2063559 Query 1577 TGTT 1580 |||| Sbjct 2063560 TGTT 2063563 Score = 113 bits (124), Expect = 1e-21 Identities = 309/468 (66%), Gaps = 13/468 (3%) Strand=Plus/Plus Query 2925 TCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGACAACGGAGTCGTTACCCGAACC 2984 ||||| ||||| |||||| | ||||| |||||| | || ||| || || || Sbjct 2064865 TCCTCAGGAAACTGGCAT-GTGATTCTCAATGGGAAGGGAATCTCGTCACCACTCGTTCC 2064923 Query 2985 ACTCGAACCTGGGTCCTGCCCAGCTACAACAACCACTTGTACAAGCGGATCCAAGGACCG 3044 || |||| ||||| || ||| | | ||||| | | ||||||| ||| |||| Sbjct 2064924 ACCAGAACTTGGGTGCTCCCCTCCGATGACAACAATCTCTACAAGCAGATTAAAGGC--- 2064980 Query 3045 GGAGGAACCGACCCCAACAATAAATTCTTTGGATTCAGCACCCCCTGGGGGTACTTTGAC 3104 || | | || ||| | ||| || | ||||||||| |||| ||| | ||| Sbjct 2064981 ----GATGC--CTCCGACATGTCCTACTTGGGCTACAGCACCCC-TGGGCCTACCTCGAC 2065033 Query 3105 TACAACCGATTCCACTGCCACTTCTCCCCCCGAGACTGGCAACGACTCATCAACAACAAC 3164 | |||| ||||||| ||||||| ||||||||||| || || |||||||||||| || Sbjct 2065034 TTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTAC 2065093 Query 3165 TGGGGCATCCGACCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAGAAGTC 3224 |||||||||||||| || || | | | | | || ||||| || ||||| || ||| Sbjct 2065094 TGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTC 2065153 Query 3225 ACTGTCCAAGACTCCAACACCACCATCGCCAACAACCTCACCAGCACGGTCCAAGTCTTT 3284 | | || || | || || ||||| ||||| || || |||| | ||| Sbjct 2065154 ATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTTT 2065213 Query 3285 GCGGACAAGGACTACCAGCTGCCGTACGTCCTCGGATCGGCTACAGAGGGCACCTT-CCC 3343 || || | ||||||||||| || || | ||| || || ||||| ||| ||| Sbjct 2065214 GCAGATGACACATACCAGCTGCCCTATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCC 2065273 Query 3344 GCCGTTCCCAGCGGATATCTACACGATCCCGCAGTATGGTTACTGCAC 3391 || ||||| | ||| | | | | | || ||||| | |||||||| Sbjct 2065274 GCTTTTCCC-GGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCAC 2065320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14868647337480