Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq9666 167 6e-38 >seq9666 Length=8596230 Score = 167 bits (184), Expect = 6e-38 Identities = 235/321 (73%), Gaps = 7/321 (2%) Strand=Plus/Plus Query 2836 TACTTTGGTTACAGCACGCCTTGGGGATACTTCGATTTCAATCGATTCCACTGCCACTTT 2895 ||||| || |||||||| ||| ||| ||| |||| ||||| ||||||| ||||||| Sbjct 2064999 TACTTGGGCTACAGCACCCCT-GGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGG 2065057 Query 2896 TCTCCCAGGGACTGGCAGCGGCTCATCAACAACCACTGGGGCATCCGCCCCAAGCGGCTC 2955 |||| | ||||| |||||||||||||||||| ||||||||||||| || ||| | | Sbjct 2065058 AGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCGACCAAAG-GCTTG 2065116 Query 2956 CA-CTTTAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGACGACCGACGGCACCACGAC 3014 | | || | |||||||| || || |||||||||| | | | | ||||| | ||| Sbjct 2065117 TAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGAC 2065176 Query 3015 CATCGCCAACAACCTCACCAGCACCATACAGGTCTTTGCGGA-CACGGAGTACCAGCTCC 3073 || ||||| ||||| || ||||| ||| | ||||| || || | |||||||| | Sbjct 2065177 AATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACA-TACCAGCTGC 2065235 Query 3074 CGTACGTGCTCGGCAACGCCCACGAGGGCTGCCTG-CCGCCGTTCCCGGCGGACGTCTTC 3132 | || ||| | || || ||| ||||| ||| || |||| ||||||| || || || Sbjct 2065236 CCTATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGG-TGATGTTTTT 2065294 Query 3133 ATGCTGCCGCAGTACGCGTAC 3153 ||| |||| |||||| |||| Sbjct 2065295 ATGTTGCCTCAGTACTGGTAC 2065315 Score = 125 bits (138), Expect = 2e-25 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 1153 CAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAACCTCGCCGA 1212 |||| ||||| || ||||| ||| | | || || || ||| ||||||| | | ||| || Sbjct 2063200 CAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 2063259 Query 1213 GGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGAACTTCCC 1272 ||| ||| || | ||||| || || ||||| | |||||||| || |||||||| || Sbjct 2063260 GGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCC 2063319 Query 1273 CTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGAC 1326 ||||| ||||| || || |||||| | || ||||||||||| || |||||||| Sbjct 2063320 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGAC 2063373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13601596692840