Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq9666 107 6e-20 >seq9666 Length=8596230 Score = 107 bits (118), Expect = 6e-20 Identities = 210/308 (68%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 2895 CCCCTGGGCCTACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGACTGGCA 2954 ||||||||||||| | ||||| ||| ||||||| ||||||| ||||||||||| || Sbjct 2065015 CCCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCA 2065074 Query 2955 AAGACTCATTAACAACCATACCGGAATACGACCAGTCGGACTCAAATTCAAGCTGTTCAA 3014 | ||||| |||||| | || || |||||| | | | |||| | ||||| Sbjct 2065075 GCGGCTCATCAACAACTACTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAA 2065134 Query 3015 CATCCAGGTCAAGGAAATCACAGTACAAGATTCGACCAAAACGATCGCCAACAATCTCAC 3074 ||| || || ||||| ||| | || || || || || ||||| || || || Sbjct 2065135 CATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 2065194 Query 3075 CAGCACCGTACAGGTCTTTGCGGA-CACGGAGCACCAGCTCCCGTACGTATTAGGAAATG 3133 ||| | ||| | ||||| || || | ||||||| || || || | ||||||| Sbjct 2065195 GTCAACCATCCAGATTTTTGCAGATGACACA-TACCAGCTGCCCTATGTGATTGGAAATG 2065253 Query 3134 CCACGCAGGGCACGTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTCAGTACGGCT 3193 |||| |||| || || | ||||| | ||| || ||| ||||||||||||| | | Sbjct 2065254 CCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGT 2065313 Query 3194 ACTGTACC 3201 |||| ||| Sbjct 2065314 ACTGCACC 2065321 Score = 104 bits (114), Expect = 7e-19 Identities = 264/399 (66%), Gaps = 7/399 (2%) Strand=Plus/Plus Query 1350 CCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACTATTATAGCGCAAGCTATAGCCC 1409 |||||||| ||||| |||| || |||||| | ||||| | || | | | ||||| |||| Sbjct 2063211 CCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATCGCCC 2063270 Query 1410 ACGGTGCTGTCCTCTTT---GGAGGAGTCAATTGGACTAATGAAAACTTTCCCTTTTGTA 1466 ||||||| | ||| || | | || ||||||||||| ||||| || || | Sbjct 2063271 ---GTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCCTTTCAATG 2063327 Query 1467 ATTGTCCTGGTAAACTGTTGATATGGTGGGAAGAGGGTAAAATGACACAAAAGATGGTCG 1526 | || | ||| || |||| |||||||| || || || ||||| || || || | Sbjct 2063328 ACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAAATTGTAG 2063387 Query 1527 AAACCGCCAAATGTATATTAGGCGGTGCTGTTGTACCTG-TGGATATCAAAGGCAAAATG 1585 | | || ||| || || || || | ||| | | | ||| ||| | ||| Sbjct 2063388 AGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGATCAAAAATGTAAAGGT 2063447 Query 1586 GCTGAACTGTGTGAAACCACCCCTGTCATTATTACCAGTAATACCAACATGTGTCAGGTC 1645 | | | |||| | || ||||| |||||||||||||||| | | |||| || Sbjct 2063448 TCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGTGTGCTGTG 2063507 Query 1646 TTTGATGGTAACAGTAGCAGTTTTGAACATACCGAACCCTTAGAAGAAAGAATGTTTATG 1705 ||||||| ||||| | | || ||||||| | ||| || || ||||||||||| | Sbjct 2063508 GTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAGGAAAGAATGTTCCTT 2063567 Query 1706 TTTAGGTTGAATAAGAAACTGGAACCTGATTTTGGAAAA 1744 |||||||| | ||||| | ||||||||| ||| Sbjct 2063568 TTTAGGTTCACAGTAAAACTCAGGCATGATTTTGGGAAA 2063606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14574282036200