Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq401307 154 4e-34 >seq401307 Length=51916 Score = 154 bits (170), Expect = 4e-34 Identities = 258/372 (69%), Gaps = 1/372 (0%) Strand=Plus/Plus Query 1288 AGTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACA 1347 ||||| |||| | ||| |||||||| | | | ||||| || ||| | ||||| | || Sbjct 14047 AGTTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCA 14106 Query 1348 TCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGA 1407 ||| |||||| || |||| ||||||| || || || || | ||||||||| ||||||| Sbjct 14107 TCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGA 14166 Query 1408 ACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGA 1467 |||| || ||||| ||||| | || |||||||||| ||||||||||| || ||||||| Sbjct 14167 ACTTGCCTTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGA 14226 Query 1468 CCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGC-GCGTGGAC 1526 | || | || ||||| || ||||||||| | | || |||| | || || Sbjct 14227 CTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGGGTTGAT 14286 Query 1527 CAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTCCAACACC 1586 || ||||| || || | || || || || || || || | | ||| || || Sbjct 14287 CAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACA 14346 Query 1587 AACATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCCGTTGCAA 1646 | | ||| || ||| |||| |||||| || ||||| ||||| || || ||| | Sbjct 14347 TATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAG 14406 Query 1647 GACCGGATGTTC 1658 || | |||||| Sbjct 14407 GAAAGAATGTTC 14418 Score = 131 bits (144), Expect = 5e-27 Identities = 403/617 (65%), Gaps = 30/617 (5%) Strand=Plus/Plus Query 2931 CACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAACAAATTTCCAGCCA 2990 |||| |||| ||| || ||| ||| ||||| | |||||||| || ||| || | Sbjct 15764 CACCAGAACTTGGATGCTCCCCTACTATGACAACAATCTCTACAAGCAGATTAA-AGGCG 15822 Query 2991 ATCAGGAGCCTCGAACGACAATCACTACTTTGGCTACAGCACCCCTTGGGGGTATTTTGA 3050 || ||||| ||||| |||||| || |||||||||||| ||| || | || Sbjct 15823 AT-----GCCTC---CGACATGTGCTACTTGGGTTACAGCACCCCT-GGGCCTACCTCGA 15873 Query 3051 CTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAAAGACTCATCAACAACAA 3110 ||||||||||||||| ||||||| | || ||||| || | |||||| ||||| | Sbjct 15874 CTTCAACAGATTCCAGTGCCACTGGAGTCTCCGAGACTGTCAGCGGCTCATCCACAACTA 15933 Query 3111 CTGGGGATTCCGACCCAAGAGACTCAACTTCAAGCTCTTTAACATTCAAGTCAAAGAGGT 3170 |||||| ||||||| ||| | |||| | || ||||| ||||| || ||||| Sbjct 15934 CTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGT 15993 Query 3171 CACGCAGAATGACGGTACGACGACGATTGCCAATAACCTTACCAGCACGGTTCAGGTGTT 3230 || | || | || || | ||| |||||||||||||| || || | ||| | || Sbjct 15994 CATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTT 16053 Query 3231 TAC---TGACTCGGAGTACCAGCTCCCGTACGTCCTCGGCTCGGCGCATCAAGGATGCCT 3287 | | |||| | |||||||| || || || | || || | | || ||| | Sbjct 16054 TGCAGATGACAC---ATACCAGCTGCCCTATGTGATTGGAAATGCCACTGAGGGGTGCTT 16110 Query 3288 -CCCGCCGTTCCCAGCAGACGTCTTCATGGTGCCACAGTATGGATACCTCACCCTGAACA 3346 ||||| ||||| | || || || ||| |||| ||||| | ||| |||| || | | Sbjct 16111 GCCCGCTTTTCCC-GGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCACCGTGCATA 16169 Query 3347 ----------ACGGGAGTCAGGCAGTA--GGACGCTCTTCATTTTACTGCCTGGAGTACT 3394 | || | || | || |||||| | ||||| ||||| || |||| Sbjct 16170 CGAAGAGCAGAGGGAACACATCCCCTACTCCACGCTCAGCTTTTTATTGCCTAGAATACT 16229 Query 3395 TTCCTTCTCAGATGCTGCGTACCGGAAACAACTTTACCTTCAGCTACACTTTTGAGGACG 3454 || | ||||||||| || ||||| || || || | || || | ||||| ||| Sbjct 16230 TTTCCAGTCAGATGCTTCGCACCGGCAATAATTTCAGTTTTCAATATGCCTTTGAAGACC 16289 Query 3455 TTCCTTTCCACAGCAGCTACGCTCACAGCCAGAGTCTGGACCGTCTCATGAATCCTCTCA 3514 | ||||| ||| ||| || || | || || || | |||| ||||| || Sbjct 16290 TCCCTTTTCACTCTTGCTTTGCGCATAATCAAAGAGTGACTCATCTCTCCAATCCCCTTG 16349 Query 3515 TCGACCAGTACCTGTAT 3531 ||||||||||||| ||| Sbjct 16350 TCGACCAGTACCTATAT 16366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14792298492240