Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_001401.2
Length=4679
Score E
Sequences producing significant alignments: (Bits) Value
seq401307 154 4e-34
>seq401307
Length=51916
Score = 154 bits (170), Expect = 4e-34
Identities = 258/372 (69%), Gaps = 1/372 (0%)
Strand=Plus/Plus
Query 1288 AGTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACA 1347
||||| |||| | ||| |||||||| | | | ||||| || ||| | ||||| | ||
Sbjct 14047 AGTTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCA 14106
Query 1348 TCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGA 1407
||| |||||| || |||| ||||||| || || || || | ||||||||| |||||||
Sbjct 14107 TCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGA 14166
Query 1408 ACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGA 1467
|||| || ||||| ||||| | || |||||||||| ||||||||||| || |||||||
Sbjct 14167 ACTTGCCTTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGA 14226
Query 1468 CCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGC-GCGTGGAC 1526
| || | || ||||| || ||||||||| | | || |||| | || ||
Sbjct 14227 CTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGGGTTGAT 14286
Query 1527 CAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTCCAACACC 1586
|| ||||| || || | || || || || || || || | | ||| || ||
Sbjct 14287 CAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACA 14346
Query 1587 AACATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCCGTTGCAA 1646
| | ||| || ||| |||| |||||| || ||||| ||||| || || ||| |
Sbjct 14347 TATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAG 14406
Query 1647 GACCGGATGTTC 1658
|| | ||||||
Sbjct 14407 GAAAGAATGTTC 14418
Score = 131 bits (144), Expect = 5e-27
Identities = 403/617 (65%), Gaps = 30/617 (5%)
Strand=Plus/Plus
Query 2931 CACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAACAAATTTCCAGCCA 2990
|||| |||| ||| || ||| ||| ||||| | |||||||| || ||| || |
Sbjct 15764 CACCAGAACTTGGATGCTCCCCTACTATGACAACAATCTCTACAAGCAGATTAA-AGGCG 15822
Query 2991 ATCAGGAGCCTCGAACGACAATCACTACTTTGGCTACAGCACCCCTTGGGGGTATTTTGA 3050
|| ||||| ||||| |||||| || |||||||||||| ||| || | ||
Sbjct 15823 AT-----GCCTC---CGACATGTGCTACTTGGGTTACAGCACCCCT-GGGCCTACCTCGA 15873
Query 3051 CTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAAAGACTCATCAACAACAA 3110
||||||||||||||| ||||||| | || ||||| || | |||||| ||||| |
Sbjct 15874 CTTCAACAGATTCCAGTGCCACTGGAGTCTCCGAGACTGTCAGCGGCTCATCCACAACTA 15933
Query 3111 CTGGGGATTCCGACCCAAGAGACTCAACTTCAAGCTCTTTAACATTCAAGTCAAAGAGGT 3170
|||||| ||||||| ||| | |||| | || ||||| ||||| || |||||
Sbjct 15934 CTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGT 15993
Query 3171 CACGCAGAATGACGGTACGACGACGATTGCCAATAACCTTACCAGCACGGTTCAGGTGTT 3230
|| | || | || || | ||| |||||||||||||| || || | ||| | ||
Sbjct 15994 CATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTT 16053
Query 3231 TAC---TGACTCGGAGTACCAGCTCCCGTACGTCCTCGGCTCGGCGCATCAAGGATGCCT 3287
| | |||| | |||||||| || || || | || || | | || ||| |
Sbjct 16054 TGCAGATGACAC---ATACCAGCTGCCCTATGTGATTGGAAATGCCACTGAGGGGTGCTT 16110
Query 3288 -CCCGCCGTTCCCAGCAGACGTCTTCATGGTGCCACAGTATGGATACCTCACCCTGAACA 3346
||||| ||||| | || || || ||| |||| ||||| | ||| |||| || | |
Sbjct 16111 GCCCGCTTTTCCC-GGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCACCGTGCATA 16169
Query 3347 ----------ACGGGAGTCAGGCAGTA--GGACGCTCTTCATTTTACTGCCTGGAGTACT 3394
| || | || | || |||||| | ||||| ||||| || ||||
Sbjct 16170 CGAAGAGCAGAGGGAACACATCCCCTACTCCACGCTCAGCTTTTTATTGCCTAGAATACT 16229
Query 3395 TTCCTTCTCAGATGCTGCGTACCGGAAACAACTTTACCTTCAGCTACACTTTTGAGGACG 3454
|| | ||||||||| || ||||| || || || | || || | ||||| |||
Sbjct 16230 TTTCCAGTCAGATGCTTCGCACCGGCAATAATTTCAGTTTTCAATATGCCTTTGAAGACC 16289
Query 3455 TTCCTTTCCACAGCAGCTACGCTCACAGCCAGAGTCTGGACCGTCTCATGAATCCTCTCA 3514
| ||||| ||| ||| || || | || || || | |||| ||||| ||
Sbjct 16290 TCCCTTTTCACTCTTGCTTTGCGCATAATCAAAGAGTGACTCATCTCTCCAATCCCCTTG 16349
Query 3515 TCGACCAGTACCTGTAT 3531
||||||||||||| |||
Sbjct 16350 TCGACCAGTACCTATAT 16366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14792298492240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |