Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq401307 322 2e-84 seq365748 80.6 9e-12 >seq401307 Length=51916 Score = 322 bits (356), Expect = 2e-84 Identities = 459/640 (72%), Gaps = 7/640 (1%) Strand=Plus/Plus Query 1335 GCTGCACTGGAAAATGCCCGTGCTGAAATGTTATTGACAAAGACTGCAACTGATTACCTG 1394 || |||||||| || || || || |||||| | |||| ||| | || || |||||| Sbjct 13872 GCAGCACTGGAGAACGCGCGAGCCGAAATGCTCCTGACGAAGTCGGCCGAAGACTACCTG 13931 Query 1395 ATAGGAAAAGACCCTGTCCTGGATATAACTAAGAATAGGGTCTATCAAATTCTGAAAATG 1454 |||| || || ||| ||| | || ||||| | ||| | ||| | | | || Sbjct 13932 CTAGGCAAGCTTCCAGTCGGGGACACCACCAAGAACAAGGTGTTCCAACGTTTCCAGGTG 13991 Query 1455 AATAACTACAACCCTCAATACATAGGAAGTATCCT-GTGCGGCTGGGTGAAGAGAGAGTT 1513 ||| ||| |||| | || | ||||| || || ||||| | | ||||| Sbjct 13992 AATCGGTACGACCCCGTCTTGGCAGCGAACATCCTAGTTCG-CTGGGCCCGGTGGGAGTT 14050 Query 1514 CAACAAAAGAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACATTGC 1573 |||||| | |||||||| ||| ||||| ||||||| |||||| | ||||| | ||| | Sbjct 14051 CAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGT 14110 Query 1574 AGAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTT 1633 || ||||| |||| |||||| || || |||||||||| |||||||||||||||||||| Sbjct 14111 GGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTT 14170 Query 1634 TCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACTAA 1693 ||||| ||||| || | ||| | ||| |||||||||||||||| ||||| ||||||| Sbjct 14171 GCCTTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAG 14230 Query 1694 TAAGGTTGTTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGT-CCGGGTAGACCAGA 1752 ||| |||| || ||||| ||||| ||||||| |||| ||||| | |||| || || | Sbjct 14231 TAAAATTGTAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGGGTTGATCAAA 14290 Query 1753 AATGTAAAGGATCTGTTTGTATTGAACCTACTCCTGTAATTATTACTAGTAATACTGATA 1812 |||||||||| || || |||||||| || |||||| ||||||| |||||||| ||| Sbjct 14291 AATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATA 14350 Query 1813 TGTGTATGATTGTTGATGGCAACTCTACTACAATGGAACATAGAATACCATTAGAGGAGC 1872 |||| | |||||||| ||| ||||| ||||||||| ||| || ||||| Sbjct 14351 AGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAGGAAA 14410 Query 1873 GTATGTTTCAAATTGTCCTATCACA--TAAATTGGAGCCTTCTTTTGGAAAAATTTCTAA 1930 | ||||| | || | ||||| ||| | || | |||||| ||||| ||| Sbjct 14411 GAATGTTCC--TTTTTAGGTTCACAGTAAAACTCAGGCATGATTTTGGGAAAATAAGTAA 14468 Query 1931 AAAAGAAGTCAGAGAATTTTTCAAATGGGCCAATGACAAT 1970 | || || |||||||||||| | |||| | |||||||| Sbjct 14469 ATGGGAGGTAAGAGAATTTTTCCAGTGGGGCCATGACAAT 14508 >seq365748 Length=20703 Score = 80.6 bits (88), Expect = 9e-12 Identities = 98/131 (75%), Gaps = 7/131 (5%) Strand=Plus/Minus Query 1602 TATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGATAAAATG 1661 |||| |||||||| ||||| ||||| |||||||| || |||||| ||| ||||||| Sbjct 7588 TATGTTTGTGTTAAATGGACCAATGAAAACTTTCCATTCAATGATGATGTCGATAAAAAT 7529 Query 1662 CTGATTTGGTGGGAGGAGGGAAAA---ATGACTAATAAGGTTGTTGAATCTGCAAAAGCA 1718 | |||||||||||| | |||| ||||| || | | |||| ||||||||||| Sbjct 7528 -TAATTTGGTGGGAGAAAAAAAAATTCATGACAAAAA---TAACTGAAACTGCAAAAGCA 7473 Query 1719 ATTTTGGGAGG 1729 || | ||||| Sbjct 7472 GTTCTAGGAGG 7462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16152400011660