Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq401307 152 2e-33 >seq401307 Length=51916 Score = 152 bits (168), Expect = 2e-33 Identities = 345/515 (67%), Gaps = 3/515 (1%) Strand=Plus/Plus Query 1142 CCTGACAAAGACGGCTCCGGACTACCTGGTGGGCA-GCAACCCGCCGGAGGACATTACCA 1200 |||||| ||| |||| ||||||||| | |||| || || | ||| ||||| |||| Sbjct 13904 CCTGACGAAGTCGGCCGAAGACTACCTGCTAGGCAAGCTTCCAGTCGG-GGACACCACCA 13962 Query 1201 AAAATCGGATCTACCAAATCCTGGAGCTGAACGGGTACGATCCGCAGTACGCGGCCTCCG 1260 | || | | | |||| | || |||| ||||||| || | || || | Sbjct 13963 AGAACAAGGTGTTCCAACGTTTCCAGGTGAATCGGTACGACCCCGTCTTGGCAGCGAACA 14022 Query 1261 TCTTCCTGGGCTGGGCGCAAAAGAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGC 1320 || | | ||||||| | | ||||| ||| | ||| |||||||| ||| | | Sbjct 14023 TCCTAGTTCGCTGGGCCCGGTGGGAGTTCAACAAGGGCAACGCCATCTGGTTCTACAGAC 14082 Query 1321 CGGCCACGACGGGTAAAACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACG 1380 | || || || | || || | ||||| ||| || ||||||| || ||||| || || | Sbjct 14083 CTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATG 14142 Query 1381 GCTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGA 1440 |||| | ||||||||| ||||||||||| || ||||| || || | || ||||||||| Sbjct 14143 GCTGTGGAAACTGGACTAATGAGAACTTGCCTTTCAATGACTGGGCAGATTAGATGGTGA 14202 Query 1441 TCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGG 1500 | ||||||||||| || |||||||| || | || ||| || || |||||| ||| Sbjct 14203 TTTGGTGGGAGGAAGGAAAGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGG 14262 Query 1501 GCGGAAGCAAGGTGC-GCGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACT 1559 || |||| | || || ||||| || || || | || || ||||| || Sbjct 14263 TTGGGTTGGCTGTGCGGGGTTGATCAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACG 14322 Query 1560 CCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACC 1619 || || | | ||| || || | | ||| || ||| |||| ||||||||||| ||| Sbjct 14323 CCTGTACTTATTACCAGTAATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACC 14382 Query 1620 TTCGAGCATCAGCAGCCGCTGCAGGACCGGATGTT 1654 || || ||| || || || |||| | ||||| Sbjct 14383 TTGGAACATAAGGGACCTTTGGAGGAAAGAATGTT 14417 Score = 141 bits (156), Expect = 3e-30 Identities = 244/348 (70%), Gaps = 25/348 (7%) Strand=Plus/Plus Query 2878 TCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGCGACAGAGTCATCACCACCAG- 2936 ||||||||||| ||||| | ||||| ||||||| || | || ||||||| | Sbjct 15706 TCCTCAGGAAACGGGCAT-GTGATTCTCAATGGCAAGGGAATC---TCGTCACCACTCGT 15761 Query 2937 --CACCAGAACCTGGGCCCTGCCCACTTACAACAACCATCTCTACAAGCAAATCTCCAGC 2994 ||||||||| ||| || ||| || ||||| ||||||||||||| || | || Sbjct 15762 TCCACCAGAACTTGGATGCTCCCCTACTATGACAACAATCTCTACAAGCAGAT-TAAAGG 15820 Query 2995 CAATCAGGAGCTTCAAACGACAACCACTACTTTGGCTACAGCACCCCTTGGGGGTATTTT 3054 | || || || ||||| |||||| || |||||||||||| ||| || | Sbjct 15821 CGAT-----GCCTC---CGACATGTGCTACTTGGGTTACAGCACCCCT-GGGCCTACCTC 15871 Query 3055 GACTTTAACAGATTCCACTGCCACT----TCTCACCACGTGACTGGCAGCGACTCATTAA 3110 ||||| ||||||||||| ||||||| |||| || ||||| ||||| ||||| | Sbjct 15872 GACTTCAACAGATTCCAGTGCCACTGGAGTCTC----CGAGACTGTCAGCGGCTCATCCA 15927 Query 3111 CAACAACTGGGGATTCCGGCCCAAGAAACTCAGCTTCAAGCTCTTCAACATCCAAGTTAG 3170 |||| ||||||| |||| || ||| || |||| | |||||||| ||||||| Sbjct 15928 CAACTACTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAA 15987 Query 3171 AGGGGTCACGCAGAACGATGGCACGACGACTATTGCCAATAACCTTAC 3218 | ||||| | || | ||||| | ||| |||||||||||||| || Sbjct 15988 GGAGGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 16035 Score = 140 bits (154), Expect = 1e-29 Identities = 191/265 (72%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 4051 CAAGGACCTATCTGGGCAAAGATTCCTCACACGGATGGACACTTTCATCCTTCTCCTCTG 4110 || || ||||| ||||| || |||||| |||| ||||| | ||| ||| |||| Sbjct 16840 CAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATTTTTGGCCTCGTCCTAAC 16899 Query 4111 ATGGGAGGCTTTGGACTGAAACATCCGCCTCCTCAAATCATGATCAAAAATACTCCGGTA 4170 |||||| ||||||| |||||||| ||||| || || ||||||||||| || Sbjct 16900 ATGGGAAGCTTTGGGTGCAAACATCCACCTCCGATGATTCTGCAGAAAAATACTCCAGTC 16959 Query 4171 CCGGCAAATCCTCCGACGACTTTCA--GCCCGGCCAAGTTTGCTTCATTTATCACTCAGT 4228 || ||| | ||||| || | |||| | ||| | | | || ||||| | ||||| Sbjct 16960 CCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTATTAAG--TCTTTTATTAGTCAGT 17017 Query 4229 ACTCCACTGGACAGGTCAGCGTGGAAATTGAGTGGGAGCTACAGAAAGAAAACAGCAAAC 4288 | |||||||| ||||| | ||||||||||| ||||||| | | |||| |||||||| Sbjct 17018 ATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAATCAGAATCCAGCAAAC 17077 Query 4289 GTTGGAATCCAGAGATTCAGTACAC 4313 | |||||||||||||| || | ||| Sbjct 17078 GCTGGAATCCAGAGATCCAATTCAC 17102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14942005216860