Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_001729.1
Length=4726
Score E
Sequences producing significant alignments: (Bits) Value
seq401307 152 2e-33
>seq401307
Length=51916
Score = 152 bits (168), Expect = 2e-33
Identities = 345/515 (67%), Gaps = 3/515 (1%)
Strand=Plus/Plus
Query 1142 CCTGACAAAGACGGCTCCGGACTACCTGGTGGGCA-GCAACCCGCCGGAGGACATTACCA 1200
|||||| ||| |||| ||||||||| | |||| || || | ||| ||||| ||||
Sbjct 13904 CCTGACGAAGTCGGCCGAAGACTACCTGCTAGGCAAGCTTCCAGTCGG-GGACACCACCA 13962
Query 1201 AAAATCGGATCTACCAAATCCTGGAGCTGAACGGGTACGATCCGCAGTACGCGGCCTCCG 1260
| || | | | |||| | || |||| ||||||| || | || || |
Sbjct 13963 AGAACAAGGTGTTCCAACGTTTCCAGGTGAATCGGTACGACCCCGTCTTGGCAGCGAACA 14022
Query 1261 TCTTCCTGGGCTGGGCGCAAAAGAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGC 1320
|| | | ||||||| | | ||||| ||| | ||| |||||||| ||| | |
Sbjct 14023 TCCTAGTTCGCTGGGCCCGGTGGGAGTTCAACAAGGGCAACGCCATCTGGTTCTACAGAC 14082
Query 1321 CGGCCACGACGGGTAAAACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACG 1380
| || || || | || || | ||||| ||| || ||||||| || ||||| || || |
Sbjct 14083 CTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATG 14142
Query 1381 GCTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGA 1440
|||| | ||||||||| ||||||||||| || ||||| || || | || |||||||||
Sbjct 14143 GCTGTGGAAACTGGACTAATGAGAACTTGCCTTTCAATGACTGGGCAGATTAGATGGTGA 14202
Query 1441 TCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGG 1500
| ||||||||||| || |||||||| || | || ||| || || |||||| |||
Sbjct 14203 TTTGGTGGGAGGAAGGAAAGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGG 14262
Query 1501 GCGGAAGCAAGGTGC-GCGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACT 1559
|| |||| | || || ||||| || || || | || || ||||| ||
Sbjct 14263 TTGGGTTGGCTGTGCGGGGTTGATCAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACG 14322
Query 1560 CCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACC 1619
|| || | | ||| || || | | ||| || ||| |||| ||||||||||| |||
Sbjct 14323 CCTGTACTTATTACCAGTAATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACC 14382
Query 1620 TTCGAGCATCAGCAGCCGCTGCAGGACCGGATGTT 1654
|| || ||| || || || |||| | |||||
Sbjct 14383 TTGGAACATAAGGGACCTTTGGAGGAAAGAATGTT 14417
Score = 141 bits (156), Expect = 3e-30
Identities = 244/348 (70%), Gaps = 25/348 (7%)
Strand=Plus/Plus
Query 2878 TCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGCGACAGAGTCATCACCACCAG- 2936
||||||||||| ||||| | ||||| ||||||| || | || ||||||| |
Sbjct 15706 TCCTCAGGAAACGGGCAT-GTGATTCTCAATGGCAAGGGAATC---TCGTCACCACTCGT 15761
Query 2937 --CACCAGAACCTGGGCCCTGCCCACTTACAACAACCATCTCTACAAGCAAATCTCCAGC 2994
||||||||| ||| || ||| || ||||| ||||||||||||| || | ||
Sbjct 15762 TCCACCAGAACTTGGATGCTCCCCTACTATGACAACAATCTCTACAAGCAGAT-TAAAGG 15820
Query 2995 CAATCAGGAGCTTCAAACGACAACCACTACTTTGGCTACAGCACCCCTTGGGGGTATTTT 3054
| || || || ||||| |||||| || |||||||||||| ||| || |
Sbjct 15821 CGAT-----GCCTC---CGACATGTGCTACTTGGGTTACAGCACCCCT-GGGCCTACCTC 15871
Query 3055 GACTTTAACAGATTCCACTGCCACT----TCTCACCACGTGACTGGCAGCGACTCATTAA 3110
||||| ||||||||||| ||||||| |||| || ||||| ||||| ||||| |
Sbjct 15872 GACTTCAACAGATTCCAGTGCCACTGGAGTCTC----CGAGACTGTCAGCGGCTCATCCA 15927
Query 3111 CAACAACTGGGGATTCCGGCCCAAGAAACTCAGCTTCAAGCTCTTCAACATCCAAGTTAG 3170
|||| ||||||| |||| || ||| || |||| | |||||||| |||||||
Sbjct 15928 CAACTACTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAA 15987
Query 3171 AGGGGTCACGCAGAACGATGGCACGACGACTATTGCCAATAACCTTAC 3218
| ||||| | || | ||||| | ||| |||||||||||||| ||
Sbjct 15988 GGAGGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 16035
Score = 140 bits (154), Expect = 1e-29
Identities = 191/265 (72%), Gaps = 4/265 (2%)
Strand=Plus/Plus
Query 4051 CAAGGACCTATCTGGGCAAAGATTCCTCACACGGATGGACACTTTCATCCTTCTCCTCTG 4110
|| || ||||| ||||| || |||||| |||| ||||| | ||| ||| ||||
Sbjct 16840 CAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATTTTTGGCCTCGTCCTAAC 16899
Query 4111 ATGGGAGGCTTTGGACTGAAACATCCGCCTCCTCAAATCATGATCAAAAATACTCCGGTA 4170
|||||| ||||||| |||||||| ||||| || || ||||||||||| ||
Sbjct 16900 ATGGGAAGCTTTGGGTGCAAACATCCACCTCCGATGATTCTGCAGAAAAATACTCCAGTC 16959
Query 4171 CCGGCAAATCCTCCGACGACTTTCA--GCCCGGCCAAGTTTGCTTCATTTATCACTCAGT 4228
|| ||| | ||||| || | |||| | ||| | | | || ||||| | |||||
Sbjct 16960 CCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTATTAAG--TCTTTTATTAGTCAGT 17017
Query 4229 ACTCCACTGGACAGGTCAGCGTGGAAATTGAGTGGGAGCTACAGAAAGAAAACAGCAAAC 4288
| |||||||| ||||| | ||||||||||| ||||||| | | |||| ||||||||
Sbjct 17018 ATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAATCAGAATCCAGCAAAC 17077
Query 4289 GTTGGAATCCAGAGATTCAGTACAC 4313
| |||||||||||||| || | |||
Sbjct 17078 GCTGGAATCCAGAGATCCAATTCAC 17102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14942005216860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |