Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq401307 123 8e-25 >seq401307 Length=51916 Score = 123 bits (136), Expect = 8e-25 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 1339 AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACA 1398 ||||| ||| | ||| |||||||| ||| | || || || || | || || | || Sbjct 14047 AGTTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCA 14106 Query 1399 TCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGA 1458 ||| ||| || ||||||| || ||||| || || ||||| | |||||||| ||||||| Sbjct 14107 TCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGA 14166 Query 1459 ACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1518 |||| || ||||| || || | || |||||||||| ||||||||||| || ||||||| Sbjct 14167 ACTTGCCTTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGA 14226 Query 1519 C 1519 | Sbjct 14227 C 14227 Score = 77.0 bits (84), Expect = 1e-10 Identities = 187/279 (67%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 4083 AGACATTTACTACCAGGGTCCCATTTGGGCCAAGATTCCTCATACCGATGGACACTTTCA 4142 |||||| || ||||||| || |||||||| || |||||| | || ||||| || ||| Sbjct 16827 AGACATCTATCACCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGG-CAATTTTT 16885 Query 4143 CCCCTCA-CCGCTGATTGGTGGGTTTGGGCTGAAACACCCGCCTCCTCAAATTTTTATCA 4201 |||| || || || | |||||| ||||| || ||||| ||| | | Sbjct 16886 GGCCTCGTCCTAACATGGGAAGCTTTGGGTGCAAACATCCACCTCCGATGATTCTGCAGA 16945 Query 4202 AGAACACCCCGGTACCTGCGAATCCTGCAACGACCTTCAGCTCTACTCCGGTAAACTCCT 4261 | || || || || ||||| | ||| | || |||||| || || | || || | Sbjct 16946 AAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTATTAAGTCTT 17005 Query 4262 TCATTACTCAGTACAGCACTGGCCAGGTGTCGGTGCAGATTGACTGGGAGATCCAGAAGG 4321 | |||| |||||| |||||| ||||| | ||| | ||||| |||||| | | || Sbjct 17006 TTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAG--CGAAAATC 17063 Query 4322 AGCGGTC--CAAACGCTGGAACCCCGAGGTCCAGTTTAC 4358 || | |||||||||||| || ||| |||| || || Sbjct 17064 AGAATCCAGCAAACGCTGGAATCCAGAGATCCAATTCAC 17102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15072600444720