Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq401307 167 7e-38 >seq401307 Length=51916 Score = 167 bits (184), Expect = 7e-38 Identities = 270/387 (70%), Gaps = 1/387 (0%) Strand=Plus/Plus Query 1287 GCTGGGCCCAGAAAAGGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCGGCCACCA 1346 ||||||||| | |||| ||| ||||| |||||||| | | | || || |||| Sbjct 14032 GCTGGGCCCGGTGGGAGTTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCA 14091 Query 1347 CGGGCAAGACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCA 1406 | ||||||| | ||||| ||| || ||||||| || ||||| || || ||||| | | Sbjct 14092 CCAGCAAGACAAGCATCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAA 14151 Query 1407 ACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGG 1466 ||||||| ||||||||||| || |||||||| || | || |||||||||| ||||||| Sbjct 14152 ACTGGACTAATGAGAACTTGCCTTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGG 14211 Query 1467 AGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCA 1526 |||| || |||||||| || | || ||||| || || |||||| | | || Sbjct 14212 AGGAAGGAAAGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGG 14271 Query 1527 AGGTGC-GCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATC 1585 |||| | || || ||||| || || |||| || || || || || || || | Sbjct 14272 CTGTGCGGGGTTGATCAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTT 14331 Query 1586 GTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCAC 1645 | ||| || || | | ||| || ||| |||| ||||||||||| ||||| || || Sbjct 14332 ATTACCAGTAATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACAT 14391 Query 1646 CAGCAGCCGTTGCAGGACCGGATGTTC 1672 || || ||| |||| | |||||| Sbjct 14392 AAGGGACCTTTGGAGGAAAGAATGTTC 14418 Score = 102 bits (112), Expect = 2e-18 Identities = 118/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 3038 CTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGATTTCAACAGATTCCACTGCCACTT 3097 |||||| || ||||||||||| |||| || | || |||||||||||||| ||||||| Sbjct 15839 CTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTG 15897 Query 3098 TTCACCACGTGACTGGCAGCGACTCATCAACAACAATTGGGGATTCCGGCCCAAGAGACT 3157 | || ||||| ||||| |||||| ||||| | ||||| |||| || ||| Sbjct 15898 GAGTCTCCGAGACTGTCAGCGGCTCATCCACAACTACTGGGGCATCCGACCAAAGGCTTG 15957 Query 3158 CAACTTCAAACTCTTCAACATCCAAGTCAAGGAGGTCA 3195 | ||||| | |||||||| ||||| |||||||||| Sbjct 15958 TAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCA 15995 Score = 95.1 bits (104), Expect = 4e-16 Identities = 195/290 (67%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 4047 GATAGAGACGTGTACCTGCAGGGTCCCATTTGGGCCAAAATTCCTCACACAGATGGACAC 4106 |||| |||| | || | ||||| || |||||||| ||||||||| |||| ||||| | Sbjct 16822 GATAAAGACATCTATCACCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAAT 16881 Query 4107 TTTCACCCGTCTCCTCTTATGGGCGGCTTTGGACTCAAGAACCCGCCTCCTCAGATCCTC 4166 ||| || |||| ||||| ||||||| ||| | || ||||| ||| || Sbjct 16882 TTTTGGCCTCGTCCTAACATGGGAAGCTTTGGGTGCAAACATCCACCTCCGATGATTCTG 16941 Query 4167 ATCAAAAACACGCCTGTTCCTGCGAATCCTCCGGCGGAGTTTTCAGCTACAAAGTTTGCT 4226 ||||| || || || ||||| | ||||| |||| || | | || || Sbjct 16942 CAGAAAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTATTAAG 17001 Query 4227 TCATTCATCACCCAATACTCCACAGGACAAGTGAGTGTGGAAATTGAATGGGAGCTGCAG 4286 || || || | || || ||||| || || || | ||||||||||| ||||||| | Sbjct 17002 TCTTTTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAA 17061 Query 4287 AAAGAAAACAGCAAGCGCTGGAATCCCGAAGTGCAGTACACATCCAATTA 4336 |||| |||||| ||||||||||| || | || | |||| ||||| Sbjct 17062 TCAGAATCCAGCAAACGCTGGAATCCAGAGATCCAATTCACAAATAATTA 17111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14916523221180