Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_002077.1
Length=4718
Score E
Sequences producing significant alignments: (Bits) Value
seq401307 167 7e-38
>seq401307
Length=51916
Score = 167 bits (184), Expect = 7e-38
Identities = 270/387 (70%), Gaps = 1/387 (0%)
Strand=Plus/Plus
Query 1287 GCTGGGCCCAGAAAAGGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCGGCCACCA 1346
||||||||| | |||| ||| ||||| |||||||| | | | || || ||||
Sbjct 14032 GCTGGGCCCGGTGGGAGTTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCA 14091
Query 1347 CGGGCAAGACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCA 1406
| ||||||| | ||||| ||| || ||||||| || ||||| || || ||||| | |
Sbjct 14092 CCAGCAAGACAAGCATCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAA 14151
Query 1407 ACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGG 1466
||||||| ||||||||||| || |||||||| || | || |||||||||| |||||||
Sbjct 14152 ACTGGACTAATGAGAACTTGCCTTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGG 14211
Query 1467 AGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCA 1526
|||| || |||||||| || | || ||||| || || |||||| | | ||
Sbjct 14212 AGGAAGGAAAGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGG 14271
Query 1527 AGGTGC-GCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATC 1585
|||| | || || ||||| || || |||| || || || || || || || |
Sbjct 14272 CTGTGCGGGGTTGATCAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTT 14331
Query 1586 GTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCAC 1645
| ||| || || | | ||| || ||| |||| ||||||||||| ||||| || ||
Sbjct 14332 ATTACCAGTAATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACAT 14391
Query 1646 CAGCAGCCGTTGCAGGACCGGATGTTC 1672
|| || ||| |||| | ||||||
Sbjct 14392 AAGGGACCTTTGGAGGAAAGAATGTTC 14418
Score = 102 bits (112), Expect = 2e-18
Identities = 118/158 (75%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 3038 CTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGATTTCAACAGATTCCACTGCCACTT 3097
|||||| || ||||||||||| |||| || | || |||||||||||||| |||||||
Sbjct 15839 CTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTG 15897
Query 3098 TTCACCACGTGACTGGCAGCGACTCATCAACAACAATTGGGGATTCCGGCCCAAGAGACT 3157
| || ||||| ||||| |||||| ||||| | ||||| |||| || |||
Sbjct 15898 GAGTCTCCGAGACTGTCAGCGGCTCATCCACAACTACTGGGGCATCCGACCAAAGGCTTG 15957
Query 3158 CAACTTCAAACTCTTCAACATCCAAGTCAAGGAGGTCA 3195
| ||||| | |||||||| ||||| ||||||||||
Sbjct 15958 TAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCA 15995
Score = 95.1 bits (104), Expect = 4e-16
Identities = 195/290 (67%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 4047 GATAGAGACGTGTACCTGCAGGGTCCCATTTGGGCCAAAATTCCTCACACAGATGGACAC 4106
|||| |||| | || | ||||| || |||||||| ||||||||| |||| ||||| |
Sbjct 16822 GATAAAGACATCTATCACCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAAT 16881
Query 4107 TTTCACCCGTCTCCTCTTATGGGCGGCTTTGGACTCAAGAACCCGCCTCCTCAGATCCTC 4166
||| || |||| ||||| ||||||| ||| | || ||||| ||| ||
Sbjct 16882 TTTTGGCCTCGTCCTAACATGGGAAGCTTTGGGTGCAAACATCCACCTCCGATGATTCTG 16941
Query 4167 ATCAAAAACACGCCTGTTCCTGCGAATCCTCCGGCGGAGTTTTCAGCTACAAAGTTTGCT 4226
||||| || || || ||||| | ||||| |||| || | | || ||
Sbjct 16942 CAGAAAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTATTAAG 17001
Query 4227 TCATTCATCACCCAATACTCCACAGGACAAGTGAGTGTGGAAATTGAATGGGAGCTGCAG 4286
|| || || | || || ||||| || || || | ||||||||||| ||||||| |
Sbjct 17002 TCTTTTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAA 17061
Query 4287 AAAGAAAACAGCAAGCGCTGGAATCCCGAAGTGCAGTACACATCCAATTA 4336
|||| |||||| ||||||||||| || | || | |||| |||||
Sbjct 17062 TCAGAATCCAGCAAACGCTGGAATCCAGAGATCCAATTCACAAATAATTA 17111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14916523221180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |