Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq401307 205 3e-49 >seq401307 Length=51916 Score = 205 bits (226), Expect = 3e-49 Identities = 453/677 (67%), Gaps = 27/677 (4%) Strand=Plus/Plus Query 907 TACATGGAGCTCGTGGATTGGCTCGTGGAGAAGGGGATCACCACCGAGAAGGAATGGCTG 966 |||| ||| | ||||| ||||| || || || || || || | |||| |||||||| Sbjct 13765 TACAGCGAGGTTGTGGACTGGCTAGTCGAAAACGGAATAACTTCTGAGAGACAATGGCTG 13824 Query 967 CTGGAAAACAGAGAAAGCTTTCGGAGCTTTCAGGCCTCGAGCAACTCGGCGCGTCAGATC 1026 |||||| ||| |||| |||||| |||||||| || |||| ||| | Sbjct 13825 CTGGAAGACAAAGAATCCTTTCGCAGCTTTCAAGC---GAGC-----------TCAA--C 13868 Query 1027 AAGACGGCCCTGCA--AGGCGCCATTCAGGAGATGCTTCTGACCAAGACGGCGGAGGACT 1084 | | | || ||| | | |||| | | || ||||| ||||| ||| |||| || |||| Sbjct 13869 AGGGCAGCACTGGAGAACGCGCGAGCC--GAAATGCTCCTGACGAAGTCGGCCGAAGACT 13926 Query 1085 ACCTCGTCGGAAAGGATCCCGTCTCGGACGACGACATCCGTCAGAACCGCATCTACAAGA 1144 |||| | || ||| ||| ||| |||| | || ||||| | | | | Sbjct 13927 ACCTGCTAGGCAAGCTTCCAGTCGGGGACACCACCA------AGAACAAGGTGTTCCAAC 13980 Query 1145 TTCTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGTATTTTGGTCGGGTGGTGCC 1204 | | | |||| | |||||||| | | | | || || | || | ||| || Sbjct 13981 GTTTCCAGGTGAATCGGTACGACCCCGTCTTGGCAGCGAACATCCTAGTTCGCTGGGCCC 14040 Query 1205 AGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACCGGCAAGA 1264 | | | | |||| | ||| | | ||| | | | ||| |||||||||| |||||| Sbjct 14041 GGTGGGAGTTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGA 14100 Query 1265 CCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCA 1324 | | ||||| ||||||||| |||| ||||||||| || ||||| || | |||||||| | Sbjct 14101 CAAGCATCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTA 14160 Query 1325 ACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGGAGGGCA 1384 | |||||||| || ||||| ||||| | || | ||| | || ||||||||||| || | Sbjct 14161 ATGAGAACTTGCCTTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAA 14220 Query 1385 AAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGGGTG-AGA 1443 | ||||| ||| | || || | || || || ||| ||| || | ||| | Sbjct 14221 AGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGG 14280 Query 1444 GTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGT 1503 || || |||||||| |||| ||| || | || ||||| ||||| || ||||||||||| Sbjct 14281 GTTGATCAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGT 14340 Query 1504 AACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGAGCATAAGCAGCCG 1563 || || | | |||| ||| | || ||||||| || || || || |||||| || Sbjct 14341 AATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCT 14400 Query 1564 TTGGAGGACAGGATGTT 1580 |||||||| || ||||| Sbjct 14401 TTGGAGGAAAGAATGTT 14417 Score = 96.9 bits (106), Expect = 1e-16 Identities = 217/322 (67%), Gaps = 3/322 (1%) Strand=Plus/Plus Query 3083 CTTTGGATTCAGCACCCCCTGGGGATACTTTGACTACAATCGATTCCACTGCCACTTTTC 3142 ||| || | ||||||||| |||| ||| | |||| ||| ||||||| ||||||| Sbjct 15842 CTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAG 15900 Query 3143 CCCGCGAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGTCCCAAAGCGATGCG 3202 | |||||||| || || |||||| ||||| ||||||||||||| || || || | Sbjct 15901 TCTCCGAGACTGTCAGCGGCTCATCCACAACTACTGGGGCATCCGACCAAAGGCTTGTAG 15960 Query 3203 CTTTAGACTCTTTAACATCCAGGTTAAAGAGGTCACGGTCCAAGACTTCAACACCACCAT 3262 | | | | || ||||| || ||||| ||||||| || || || | || || Sbjct 15961 AATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGACAAT 16020 Query 3263 CGGCAACAACCTCACCAGTACGGTCCAGGTCTTTGCGGACAAGGACTACCAACTGCCGTA 3322 | ||| ||||| || || ||||| | ||||| || | ||||| ||||| || Sbjct 16021 TGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCCTA 16080 Query 3323 CGTCCTCGGATCGGCTACCGAAGGCACCTT-CCCGCCGTTCCCAGCGGATATCTACACGA 3381 || | ||| || || || || ||| ||||| ||||| | ||| | | | | Sbjct 16081 TGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCC-GGTGATGTTTTTATGT 16139 Query 3382 TCCCGCAGTACGGGTACTGCAC 3403 | || |||||| |||||||||| Sbjct 16140 TGCCTCAGTACTGGTACTGCAC 16161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14840077234140