Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_004828.1
Length=4694
Score E
Sequences producing significant alignments: (Bits) Value
seq401307 205 3e-49
>seq401307
Length=51916
Score = 205 bits (226), Expect = 3e-49
Identities = 453/677 (67%), Gaps = 27/677 (4%)
Strand=Plus/Plus
Query 907 TACATGGAGCTCGTGGATTGGCTCGTGGAGAAGGGGATCACCACCGAGAAGGAATGGCTG 966
|||| ||| | ||||| ||||| || || || || || || | |||| ||||||||
Sbjct 13765 TACAGCGAGGTTGTGGACTGGCTAGTCGAAAACGGAATAACTTCTGAGAGACAATGGCTG 13824
Query 967 CTGGAAAACAGAGAAAGCTTTCGGAGCTTTCAGGCCTCGAGCAACTCGGCGCGTCAGATC 1026
|||||| ||| |||| |||||| |||||||| || |||| ||| |
Sbjct 13825 CTGGAAGACAAAGAATCCTTTCGCAGCTTTCAAGC---GAGC-----------TCAA--C 13868
Query 1027 AAGACGGCCCTGCA--AGGCGCCATTCAGGAGATGCTTCTGACCAAGACGGCGGAGGACT 1084
| | | || ||| | | |||| | | || ||||| ||||| ||| |||| || ||||
Sbjct 13869 AGGGCAGCACTGGAGAACGCGCGAGCC--GAAATGCTCCTGACGAAGTCGGCCGAAGACT 13926
Query 1085 ACCTCGTCGGAAAGGATCCCGTCTCGGACGACGACATCCGTCAGAACCGCATCTACAAGA 1144
|||| | || ||| ||| ||| |||| | || ||||| | | | |
Sbjct 13927 ACCTGCTAGGCAAGCTTCCAGTCGGGGACACCACCA------AGAACAAGGTGTTCCAAC 13980
Query 1145 TTCTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGTATTTTGGTCGGGTGGTGCC 1204
| | | |||| | |||||||| | | | | || || | || | ||| ||
Sbjct 13981 GTTTCCAGGTGAATCGGTACGACCCCGTCTTGGCAGCGAACATCCTAGTTCGCTGGGCCC 14040
Query 1205 AGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACCGGCAAGA 1264
| | | | |||| | ||| | | ||| | | | ||| |||||||||| ||||||
Sbjct 14041 GGTGGGAGTTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGA 14100
Query 1265 CCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCA 1324
| | ||||| ||||||||| |||| ||||||||| || ||||| || | |||||||| |
Sbjct 14101 CAAGCATCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTA 14160
Query 1325 ACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGGAGGGCA 1384
| |||||||| || ||||| ||||| | || | ||| | || ||||||||||| || |
Sbjct 14161 ATGAGAACTTGCCTTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAA 14220
Query 1385 AAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGGGTG-AGA 1443
| ||||| ||| | || || | || || || ||| ||| || | ||| |
Sbjct 14221 AGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGG 14280
Query 1444 GTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGT 1503
|| || |||||||| |||| ||| || | || ||||| ||||| || |||||||||||
Sbjct 14281 GTTGATCAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGT 14340
Query 1504 AACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGAGCATAAGCAGCCG 1563
|| || | | |||| ||| | || ||||||| || || || || |||||| ||
Sbjct 14341 AATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCT 14400
Query 1564 TTGGAGGACAGGATGTT 1580
|||||||| || |||||
Sbjct 14401 TTGGAGGAAAGAATGTT 14417
Score = 96.9 bits (106), Expect = 1e-16
Identities = 217/322 (67%), Gaps = 3/322 (1%)
Strand=Plus/Plus
Query 3083 CTTTGGATTCAGCACCCCCTGGGGATACTTTGACTACAATCGATTCCACTGCCACTTTTC 3142
||| || | ||||||||| |||| ||| | |||| ||| ||||||| |||||||
Sbjct 15842 CTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAG 15900
Query 3143 CCCGCGAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGTCCCAAAGCGATGCG 3202
| |||||||| || || |||||| ||||| ||||||||||||| || || || |
Sbjct 15901 TCTCCGAGACTGTCAGCGGCTCATCCACAACTACTGGGGCATCCGACCAAAGGCTTGTAG 15960
Query 3203 CTTTAGACTCTTTAACATCCAGGTTAAAGAGGTCACGGTCCAAGACTTCAACACCACCAT 3262
| | | | || ||||| || ||||| ||||||| || || || | || ||
Sbjct 15961 AATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGACAAT 16020
Query 3263 CGGCAACAACCTCACCAGTACGGTCCAGGTCTTTGCGGACAAGGACTACCAACTGCCGTA 3322
| ||| ||||| || || ||||| | ||||| || | ||||| ||||| ||
Sbjct 16021 TGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCCTA 16080
Query 3323 CGTCCTCGGATCGGCTACCGAAGGCACCTT-CCCGCCGTTCCCAGCGGATATCTACACGA 3381
|| | ||| || || || || ||| ||||| ||||| | ||| | | | |
Sbjct 16081 TGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCC-GGTGATGTTTTTATGT 16139
Query 3382 TCCCGCAGTACGGGTACTGCAC 3403
| || |||||| ||||||||||
Sbjct 16140 TGCCTCAGTACTGGTACTGCAC 16161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14840077234140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |