Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq401307 161 3e-36 >seq401307 Length=51916 Score = 161 bits (178), Expect = 3e-36 Identities = 251/364 (69%), Gaps = 1/364 (0%) Strand=Plus/Plus Query 1331 AAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAA 1390 ||| | ||| || ||||| | || |||| ||||||||| | ||||| | ||||| ||| Sbjct 14055 AAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAG 14114 Query 1391 GCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNN 1450 || ||| | | | ||||| ||||||||||||| |||||||||||||||||||| Sbjct 14115 GCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCCT 14174 Query 1451 NNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAG 1510 || | ||| |||| ||||||||||| ||||||||||| || || Sbjct 14175 TTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAA 14234 Query 1511 GTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTACGAG-TGGATCAAAAATG 1569 | || || | || || ||||| |||| |||| || || | | ||||||||||| Sbjct 14235 ATTGTAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGGGTTGATCAAAAATG 14294 Query 1570 TAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTG 1629 |||| || || ||| | || | || || || |||| ||| ||||| | | ||| Sbjct 14295 TAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGTG 14354 Query 1630 TGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCAT 1689 || ||||| ||||||||| ||| ||||| ||||| || || |||| || | || Sbjct 14355 TGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAGGAAAGAAT 14414 Query 1690 GTTC 1693 |||| Sbjct 14415 GTTC 14418 Score = 129 bits (142), Expect = 2e-26 Identities = 221/310 (71%), Gaps = 12/310 (4%) Strand=Plus/Plus Query 3025 CCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTC--TCGCCAAGAGACTGG 3082 |||||||| ||| | ||||| ||| | ||||| ||||||| || || ||||||| Sbjct 15856 CCCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCTCC--GAGACTGT 15913 Query 3083 CAAAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCA-AGTCCGCATCTT 3141 || |||||||| ||||| ||||||| | || || ||| || || | | || || || Sbjct 15914 CAGCGGCTCATCCACAACTACTGGGGCATCCGACC-AAAGGCTTGTAGAATCAAAATTTT 15972 Query 3142 CAACATCCAAGTTAAGGAGGTCACGACGTCTAACGGGGAGAC-GACCGTATCCAACAACC 3200 |||||| |||||||||||||||| | | | | | || | | ||| | |||| |||| Sbjct 15973 CAACATACAAGTTAAGGAGGTCATGGAGGC-AGCAGGCACAAAGACAATTGCCAATAACC 16031 Query 3201 TCACCAGCACGGTCCAGATCTTTGCGGACAGCACGTACGAGCTCCCGTACGTGAT-GGAT 3259 | || || ||||||| ||||| || ||| ||| |||| || || ||||| ||| Sbjct 16032 TAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCCTATGTGATTGGAA 16091 Query 3260 GCAGGTCAG-GAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCCTCAGTA 3318 | | || ||||| ||||||| |||| ||| || || || ||| |||||||||| Sbjct 16092 --ATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTA 16149 Query 3319 CGGGTACTGC 3328 | |||||||| Sbjct 16150 CTGGTACTGC 16159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14836891984680