Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_005889.1
Length=4693
Score E
Sequences producing significant alignments: (Bits) Value
seq401307 161 3e-36
>seq401307
Length=51916
Score = 161 bits (178), Expect = 3e-36
Identities = 251/364 (69%), Gaps = 1/364 (0%)
Strand=Plus/Plus
Query 1331 AAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAA 1390
||| | ||| || ||||| | || |||| ||||||||| | ||||| | ||||| |||
Sbjct 14055 AAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAG 14114
Query 1391 GCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNN 1450
|| ||| | | | ||||| ||||||||||||| ||||||||||||||||||||
Sbjct 14115 GCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCCT 14174
Query 1451 NNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAG 1510
|| | ||| |||| ||||||||||| ||||||||||| || ||
Sbjct 14175 TTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAA 14234
Query 1511 GTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTACGAG-TGGATCAAAAATG 1569
| || || | || || ||||| |||| |||| || || | | |||||||||||
Sbjct 14235 ATTGTAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGGGTTGATCAAAAATG 14294
Query 1570 TAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTG 1629
|||| || || ||| | || | || || || |||| ||| ||||| | | |||
Sbjct 14295 TAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGTG 14354
Query 1630 TGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCAT 1689
|| ||||| ||||||||| ||| ||||| ||||| || || |||| || | ||
Sbjct 14355 TGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAGGAAAGAAT 14414
Query 1690 GTTC 1693
||||
Sbjct 14415 GTTC 14418
Score = 129 bits (142), Expect = 2e-26
Identities = 221/310 (71%), Gaps = 12/310 (4%)
Strand=Plus/Plus
Query 3025 CCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTC--TCGCCAAGAGACTGG 3082
|||||||| ||| | ||||| ||| | ||||| ||||||| || || |||||||
Sbjct 15856 CCCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCTCC--GAGACTGT 15913
Query 3083 CAAAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCA-AGTCCGCATCTT 3141
|| |||||||| ||||| ||||||| | || || ||| || || | | || || ||
Sbjct 15914 CAGCGGCTCATCCACAACTACTGGGGCATCCGACC-AAAGGCTTGTAGAATCAAAATTTT 15972
Query 3142 CAACATCCAAGTTAAGGAGGTCACGACGTCTAACGGGGAGAC-GACCGTATCCAACAACC 3200
|||||| |||||||||||||||| | | | | | || | | ||| | |||| ||||
Sbjct 15973 CAACATACAAGTTAAGGAGGTCATGGAGGC-AGCAGGCACAAAGACAATTGCCAATAACC 16031
Query 3201 TCACCAGCACGGTCCAGATCTTTGCGGACAGCACGTACGAGCTCCCGTACGTGAT-GGAT 3259
| || || ||||||| ||||| || ||| ||| |||| || || ||||| |||
Sbjct 16032 TAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCCTATGTGATTGGAA 16091
Query 3260 GCAGGTCAG-GAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCCTCAGTA 3318
| | || ||||| ||||||| |||| ||| || || || ||| ||||||||||
Sbjct 16092 --ATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTA 16149
Query 3319 CGGGTACTGC 3328
| ||||||||
Sbjct 16150 CTGGTACTGC 16159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14836891984680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |