Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq401307 280 5e-72 >seq401307 Length=51916 Score = 280 bits (310), Expect = 5e-72 Identities = 395/550 (72%), Gaps = 5/550 (1%) Strand=Plus/Plus Query 1346 GCAGCACTTGAAAATGCCCGAGCAGAAATGCTACTAACAAAAACTGCCACAGACTATTTG 1405 |||||||| || || || ||||| |||||||| || || || | ||| |||||| || Sbjct 13872 GCAGCACTGGAGAACGCGCGAGCCGAAATGCTCCTGACGAAGTCGGCCGAAGACTACCTG 13931 Query 1406 ATTGGAAAAGACCCAGTTCTGGACATTACTAAAAATCGGATCTATCAAATTCTGAAGTTG 1465 | || || ||||| ||||| || || || | | | ||| | | || || Sbjct 13932 CTAGGCAAGCTTCCAGTCGGGGACACCACCAAGAACAAGGTGTTCCAACGTTTCCAGGTG 13991 Query 1466 AATAACTATAACCCTCAATATGTAGGGAGCGTCCTATGCGGATGGGTGAAAAGAGAATTC 1525 ||| || |||| | | || || | ||||| | |||| | || ||| Sbjct 13992 AATCGGTACGACCCCGTCTTGGCAGCGAACATCCTAGTTCGCTGGGCCCGGTGGGAGTTC 14051 Query 1526 AACAAAAGAAATGCCATATGGCTCTACGGACCTGCGACCACCGGAAAGACCAACATAGCC 1585 ||||| | || ||||| ||| ||||| |||||||||||||| | ||||| | ||| | Sbjct 14052 AACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTG 14111 Query 1586 GAGGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTC 1645 |||||||| |||| |||||| || || |||||||||| |||||||||||||||||||| Sbjct 14112 GAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTG 14171 Query 1646 CCATTTAATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAAATGACCAAT 1705 || || |||||||| | ||| | ||| | || ||||||||||| ||||| ||||| | | Sbjct 14172 CCTTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGT 14231 Query 1706 AAAGTAGTGGAATCCGCAAAAGCGATACTgggggggTCTGCTGTAC-GAGTTGATCAAAA 1764 ||| | || || || || ||||| || ||| |||| ||||| | | ||||||||||| Sbjct 14232 AAAATTGTAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGGGTTGATCAAAA 14291 Query 1765 GTGTAAGGGGTCTGTTTGTATTGAACCTACTCCTGTAATAATTACCAGTAATACTGATA- 1823 ||||| || || || |||||||| || |||||| | |||||||||||||| ||| Sbjct 14292 ATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAA 14351 Query 1824 -TGTGCATGATTGTGGATGGAAATTCTACTACAATGGAACACAGAATTCCTTTGGAGGAA 1882 ||||| || | || ||||| || ||||| ||||||| | |||||||||||| Sbjct 14352 GTGTGC-TG-TGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAGGAA 14409 Query 1883 AGAATGTTCC 1892 |||||||||| Sbjct 14410 AGAATGTTCC 14419 Score = 172 bits (190), Expect = 2e-39 Identities = 299/425 (70%), Gaps = 16/425 (4%) Strand=Plus/Plus Query 3257 GGATACAGCACCCCCTGGGGGTACTTTGATTTCAACAGATTCCACTGCCATT--TCTCTC 3314 || ||||||||||| |||| ||| | || |||||||||||||| ||||| | |||| Sbjct 15846 GGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCTC 15904 Query 3315 CAAGAGACTGGCAGAGACTCATCAACAACCATTGGGGGATTAGACCGAAAGCACTCAAAT 3374 | ||||||| ||| | |||||| ||||| | ||||| || |||| || || | | Sbjct 15905 C--GAGACTGTCAGCGGCTCATCCACAACTACTGGGGCATCCGACCAAAGGCTTGTAGAA 15962 Query 3375 TCAAGATATTCAATGTGCAAGTTAAAGAAGTCACGACGCAAGACCAG--ACAAAGACTAT 3432 |||| || ||||| | |||||||| || |||| | | || ||| |||||||| || Sbjct 15963 TCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAG--CAGGCACAAAGACAAT 16020 Query 3433 TGCTAACAACCTTACCTCTACAATCCAGATATTCACGGATAATGAACACCAGCTGCCCTA 3492 ||| || ||||| || || || |||||||| || | ||| | | ||||||||||||| Sbjct 16021 TGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCCTA 16080 Query 3493 TGTTCTGGGCTCGGCCACGGAGGGGACGATGCCACCGTTCCCCTCAGATGTGTATGCCTT 3552 ||| | || ||||| |||||| |||| | || ||| ||||| | | || Sbjct 16081 TGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTT 16140 Query 3553 GCCCCAGTACGGCTACTGCACAATGCACACCA--ACCAGAGTGGAGCGAGATTC---AAT 3607 ||| |||||| | |||||||| |||| || | | ||||| ||| | | || | | | Sbjct 16141 GCCTCAGTACTGGTACTGCACCGTGCATACGAAGAGCAGAG-GGAAC-ACATCCCCTACT 16198 Query 3608 GACAGAAGTGCCTTCTATTGCTTAGAGTACTTCCCCAGTCAGATGCTGAGAACAGGGAAT 3667 | || || |||||| |||| ||||| ||||||||||||| | || || ||| Sbjct 16199 CCACGCTCAGCTTTTTATTGCCTAGAATACTTTTCCAGTCAGATGCTTCGCACCGGCAAT 16258 Query 3668 AATTT 3672 ||||| Sbjct 16259 AATTT 16263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16235216497620