Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq401307 120 9e-24 >seq401307 Length=51916 Score = 120 bits (132), Expect = 9e-24 Identities = 199/286 (70%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 3795 CAGGTATGGTGTGGTCTAATAGAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTC 3854 |||||||| | ||| ||| |||||| || ||||| ||||||||||| ||||||| Sbjct 16810 CAGGTATG-TATGG----ATAAAGACATCTATCACCAGGGCCCTATTTGGGCGAAAATTC 16864 Query 3855 CAAATACAGATGGACATTTTCATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATC 3914 | | || ||||| ||||| ||| ||| | ||||| | ||||| | ||||||| Sbjct 16865 CTGACACTGATGGCAATTTTTGGCCTCGTCCTAACATGGGAAGCTTTGGGTGCAAACATC 16924 Query 3915 CTCCGCCTATGATTCTGATCAAAAATACACCAGTTCCTGCTGATCCTCCAACTACCTTCA 3974 | || || ||||||||| |||||||| ||||| ||||| || ||||| | |||||| Sbjct 16925 CACCTCCGATGATTCTGCAGAAAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCA 16984 Query 3975 ATCCAATGCCACAGACTAGTTTCATTACTGAATACAGTACAGGACAAGTAACTGTTGAAA 4034 | || ||| | ||| |||| | | || || || || ||||| || |||| Sbjct 16985 CTGAAACGCCTATTAAGTCTTTTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAA 17044 Query 4035 TGTTGTGGGAGGTACAGAAAGAATCCTCCAAAAGATGGAATCCAGA 4080 | |||||| | | ||||||| |||| | ||||||||||| Sbjct 17045 TTGATTGGGAGCGAAAATCAGAATCCAGCAAACGCTGGAATCCAGA 17090 Score = 95.1 bits (104), Expect = 3e-16 Identities = 201/295 (68%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 2831 CCCTGGGGGTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGACTGGCAA 2890 ||||||| ||| | |||||||| ||||||| ||||||| | ||||||||| || Sbjct 15857 CCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCTCCGAGACTGTCAG 15916 Query 2891 AGACTCATCAACAACCACACAGGCATCAGGCCGAAAGGACTCAA-AATCAAAGTCTTTAA 2949 | |||||| ||||| || |||||| | || ||||| | | ||||||| | || || Sbjct 15917 CGGCTCATCCACAACTACTGGGGCATCCGACC-AAAGGCTTGTAGAATCAAAATTTTCAA 15975 Query 2950 CGTCCAAGTCAAAGAAGTTACA-ACACAAGATTCAACGAAAACAATTGCCAACAATCTCA 3008 | | ||||| || || || | | || | || | || ||||||||||| || || | Sbjct 15976 CATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCA-CAAAGACAATTGCCAATAACCTAA 16034 Query 3009 CCAGCACCGTACAGATCTTTGCGGACGAGAACTACGACTTACCATATGTATTAGGCAGTG 3068 | ||| | ||||| ||||| || || | ||| | | || ||||| | || | || Sbjct 16035 CGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCCCTATGTGATTGGAAATG 16094 Query 3069 CTACACAAGGCACATTTCCTCCATTTCCCAATGATGTATTTATGTTACCACAATA 3123 | || | || || || | |||||| |||||| |||||||| || || || Sbjct 16095 CCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTA 16149 Score = 93.3 bits (102), Expect = 1e-15 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1280 CAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACCATCATCGCTCA 1339 |||| | ||| |||||||| | || | || || || ||| |||| || | ||||| | Sbjct 14054 CAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 14113 Query 1340 AGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAATGAAAACTTTCC 1399 ||||| || | |||||| | | | || ||| || ||||||||||| ||||| || Sbjct 14114 GGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCC 14173 Query 1400 CTTCTGTAACTGTCCAGGGAAACTGCTTATCTGGTGGGAGGAGGGCAAGATGACAAACAA 1459 ||| | |||| ||| | || | || ||||||||||| || |||||||| | || Sbjct 14174 TTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAA 14233 Query 1460 AATGGTGGAGACGGCTAAA 1478 ||| || ||| | |||||| Sbjct 14234 AATTGTAGAGTCTGCTAAA 14252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14005541875620