Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_006152.1
Length=4642
Score E
Sequences producing significant alignments: (Bits) Value
seq401307 223 1e-54
>seq401307
Length=51916
Score = 223 bits (246), Expect = 1e-54
Identities = 272/370 (74%), Gaps = 1/370 (0%)
Strand=Plus/Plus
Query 1316 TTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATC 1375
||||||||| | ||| || ||||| ||||| |||| || || ||| ||||||| | ||||
Sbjct 14049 TTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATC 14108
Query 1376 GCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAAC 1435
| |||||| ||||||| ||||||| ||||| ||||| | |||||||| ||||| |||
Sbjct 14109 GTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAAC 14168
Query 1436 TTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACC 1495
|| || || |||||||| | || | ||| | |||||||||||||| |||||||||||
Sbjct 14169 TTGCCTTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACT 14228
Query 1496 AACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGC-GGGTCGATCA 1554
| || | || || || || || ||||| ||| || | |||| |||| |||||
Sbjct 14229 AGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGGGTTGATCA 14288
Query 1555 GAAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAA 1614
||||||||| || || |||||||| | || ||||| || | || |||||| |
Sbjct 14289 AAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATA 14348
Query 1615 CATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGA 1674
| ||||| ||||| |||||||| ||| ||||| ||||| || || |||||||
Sbjct 14349 TAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAGGA 14408
Query 1675 CCGCATGTTC 1684
| ||||||
Sbjct 14409 AAGAATGTTC 14418
Score = 181 bits (200), Expect = 3e-42
Identities = 362/529 (68%), Gaps = 19/529 (4%)
Strand=Plus/Plus
Query 2992 CTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCACTG 3051
|||||| || ||||||||||| |||| ||| | ||||| ||| | ||||| |||||||
Sbjct 15839 CTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTG 15897
Query 3052 GAGCCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTCCCT 3111
||| | ||||||||| || | |||||| |||||||||||||| || |||| | |
Sbjct 15898 GAGTCTCCGAGACTGTCAGCGGCTCATCCACAACTACTGGGGCATCCGACCAAAGGCTTG 15957
Query 3112 CAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCACGG-TGCAGGACTCCACCACNN 3170
||| ||||||| |||||||| ||||| || ||||||| || |||| | ||| |
Sbjct 15958 TAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCA-GGCACAAAGA 16016
Query 3171 NNATCGCCAACAACCTCACCTCCACCGTCCAAGTGTTTACGGACGACGACTACCAGCTGC 3230
|| ||||| ||||| || || ||| |||| | ||| | || ||| ||||||||||
Sbjct 16017 CAATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGC 16076
Query 3231 CCTACGTCGTCGGCAACGGGACCGAGGGATGCCTGCCGGCCTTCCCTCCGCAGGTCTTTA 3290
|||| || | || || | || ||||| ||| |||| || || || | || ||||
Sbjct 16077 CCTATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTA 16136
Query 3291 CGCTGCCGCAGTACGGTTAC-GC--------GACGCTGAACCGCGACAACACAGAAAATC 3341
| |||| |||||| | ||| || ||| || | | | ||||| | |
Sbjct 16137 TGTTGCCTCAGTACTGGTACTGCACCGTGCATACGAAGAGCAGAGGGAACAC----ATCC 16192
Query 3342 CCACCGAGAGGAGCAGCTTCTT-CTGCCTAGAGTACTTTCCCAGCAAGATGCTGAGAACG 3400
|| | | | |||||| || |||||||| |||||| |||| ||||||| | ||
Sbjct 16193 CCTACTCCACGCTCAGCTTTTTATTGCCTAGAATACTTTTCCAGTCAGATGCTTCGCACC 16252
Query 3401 GGCAACAACTTTGAGTTTAC-CTACAACTTTGAGGAGGTGCCCTTCCACTCCAGCTTCGC 3459
||||| || ||| ||||| | || |||||| || | || || ||||| |||| ||
Sbjct 16253 GGCAATAA-TTTCAGTTTTCAATATGCCTTTGAAGACCTCCCTTTTCACTCTTGCTTTGC 16311
Query 3460 TCCCAGTCAGAACCTGTTCAAGCTGGCCAACCCGCTGGTGGACCAGTAC 3508
| | ||| | || | || |||| || || || |||||||||
Sbjct 16312 GCATAATCAAAGAGTGACTCATCTCTCCAATCCCCTTGTCGACCAGTAC 16360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14674444262220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |