Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq401307 223 1e-54 >seq401307 Length=51916 Score = 223 bits (246), Expect = 1e-54 Identities = 272/370 (74%), Gaps = 1/370 (0%) Strand=Plus/Plus Query 1316 TTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATC 1375 ||||||||| | ||| || ||||| ||||| |||| || || ||| ||||||| | |||| Sbjct 14049 TTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATC 14108 Query 1376 GCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAAC 1435 | |||||| ||||||| ||||||| ||||| ||||| | |||||||| ||||| ||| Sbjct 14109 GTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAAC 14168 Query 1436 TTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACC 1495 || || || |||||||| | || | ||| | |||||||||||||| ||||||||||| Sbjct 14169 TTGCCTTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACT 14228 Query 1496 AACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGC-GGGTCGATCA 1554 | || | || || || || || ||||| ||| || | |||| |||| ||||| Sbjct 14229 AGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGGGTTGATCA 14288 Query 1555 GAAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAA 1614 ||||||||| || || |||||||| | || ||||| || | || |||||| | Sbjct 14289 AAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATA 14348 Query 1615 CATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGA 1674 | ||||| ||||| |||||||| ||| ||||| ||||| || || ||||||| Sbjct 14349 TAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAGGA 14408 Query 1675 CCGCATGTTC 1684 | |||||| Sbjct 14409 AAGAATGTTC 14418 Score = 181 bits (200), Expect = 3e-42 Identities = 362/529 (68%), Gaps = 19/529 (4%) Strand=Plus/Plus Query 2992 CTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCACTG 3051 |||||| || ||||||||||| |||| ||| | ||||| ||| | ||||| ||||||| Sbjct 15839 CTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTG 15897 Query 3052 GAGCCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTCCCT 3111 ||| | ||||||||| || | |||||| |||||||||||||| || |||| | | Sbjct 15898 GAGTCTCCGAGACTGTCAGCGGCTCATCCACAACTACTGGGGCATCCGACCAAAGGCTTG 15957 Query 3112 CAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCACGG-TGCAGGACTCCACCACNN 3170 ||| ||||||| |||||||| ||||| || ||||||| || |||| | ||| | Sbjct 15958 TAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCA-GGCACAAAGA 16016 Query 3171 NNATCGCCAACAACCTCACCTCCACCGTCCAAGTGTTTACGGACGACGACTACCAGCTGC 3230 || ||||| ||||| || || ||| |||| | ||| | || ||| |||||||||| Sbjct 16017 CAATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGC 16076 Query 3231 CCTACGTCGTCGGCAACGGGACCGAGGGATGCCTGCCGGCCTTCCCTCCGCAGGTCTTTA 3290 |||| || | || || | || ||||| ||| |||| || || || | || |||| Sbjct 16077 CCTATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTA 16136 Query 3291 CGCTGCCGCAGTACGGTTAC-GC--------GACGCTGAACCGCGACAACACAGAAAATC 3341 | |||| |||||| | ||| || ||| || | | | ||||| | | Sbjct 16137 TGTTGCCTCAGTACTGGTACTGCACCGTGCATACGAAGAGCAGAGGGAACAC----ATCC 16192 Query 3342 CCACCGAGAGGAGCAGCTTCTT-CTGCCTAGAGTACTTTCCCAGCAAGATGCTGAGAACG 3400 || | | | |||||| || |||||||| |||||| |||| ||||||| | || Sbjct 16193 CCTACTCCACGCTCAGCTTTTTATTGCCTAGAATACTTTTCCAGTCAGATGCTTCGCACC 16252 Query 3401 GGCAACAACTTTGAGTTTAC-CTACAACTTTGAGGAGGTGCCCTTCCACTCCAGCTTCGC 3459 ||||| || ||| ||||| | || |||||| || | || || ||||| |||| || Sbjct 16253 GGCAATAA-TTTCAGTTTTCAATATGCCTTTGAAGACCTCCCTTTTCACTCTTGCTTTGC 16311 Query 3460 TCCCAGTCAGAACCTGTTCAAGCTGGCCAACCCGCTGGTGGACCAGTAC 3508 | | ||| | || | || |||| || || || ||||||||| Sbjct 16312 GCATAATCAAAGAGTGACTCATCTCTCCAATCCCCTTGTCGACCAGTAC 16360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14674444262220